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| caMassClass-package | Processing and Classification of Protein Mass Spectra Data |
| caMassClass | Processing and Classification of Protein Mass Spectra Data |
| msc.baseline.subtract | Baseline Subtraction for Mass Spectra Data |
| msc.biomarkers.fill | Fill Empty Spaces in Biomarker Matrix |
| msc.biomarkers.read.csv | Read and Write biomarker matrix in CSV format |
| msc.biomarkers.write.csv | Read and Write biomarker matrix in CSV format |
| msc.classifier.run | Train and Test Chosen Classifier. |
| msc.classifier.test | Test a Classifier through Cross-validation |
| msc.copies.merge | Merge Multiple Copies of Mass Spectra Samples |
| msc.features.remove | Remove Highly Correlated Features |
| msc.features.scale | Scale Classification Data |
| msc.features.select | Reduce Number of Features Prior to Classification |
| msc.mass.adjust | Perform Normalization and Mass Drift Adjustment for Mass Spectra Data. |
| msc.mass.adjust.apply | Perform Normalization and Mass Drift Adjustment for Mass Spectra Data. |
| msc.mass.adjust.calc | Perform Normalization and Mass Drift Adjustment for Mass Spectra Data. |
| msc.mass.cut | Remove Low Mass Portion of the Mass Spectra Data. |
| msc.peaks.align | Align Peaks of Mass Spectra into a "Biomarker" Matrix |
| msc.peaks.alignment | Align Peaks of Mass Spectra into a "Biomarker" Matrix |
| msc.peaks.clust | Clusters Peaks of Mass Spectra |
| msc.peaks.find | Find Peaks of Mass Spectra |
| msc.peaks.read.csv | Read and Write Mass Spectra Peaks in CSV Format |
| msc.peaks.read.mzXML | Read / write calculated peaks heights and positions to/from mzXML Files |
| msc.peaks.write.csv | Read and Write Mass Spectra Peaks in CSV Format |
| msc.peaks.write.mzXML | Read / write calculated peaks heights and positions to/from mzXML Files |
| msc.preprocess.run | Preprocessing Pipeline of Protein Mass Spectra |
| msc.project.read | Read and Manage a Batch of Protein Mass Spectra |
| msc.project.run | Read and Preprocess Protein Mass Spectra |
| msc.rawMS.read.csv | Read Protein Mass Spectra from CSV files |
| msc.rawMS.read.mzXML | Read / write raw Mass Spectra to/from mzXML Files |
| msc.rawMS.write.mzXML | Read / write raw Mass Spectra to/from mzXML Files |
| msc.sample.correlation | Sample Correlation |
| new.mzXML | Read and Write mzXML Files |
| read.mzXML | Read and Write mzXML Files |
| write.mzXML | Read and Write mzXML Files |