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| %*% | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| %*%,ANY,ANY-method | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| %*%,bdsmatrix,numeric-method | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| %*%,bdsmatrix-method | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| %*%,gchol.bdsmatrix,numeric-method | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| %*%,gchol.bdsmatrix-method | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| %*%,matrix,bdsmatrix-method | Class "bdsmatrix" |
| %*%,matrix,gchol.bdsmatrix-method | Class "gchol.bdsmatrix" |
| %*%,numeric,bdsmatrix-method | Class "bdsmatrix" |
| %*%,numeric,gchol.bdsmatrix-method | Class "gchol.bdsmatrix" |
| %*%-methods | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| %*%.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| %*%.default | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| %*%.gchol.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| align.pedigree | Generate plotting information for a pedigree |
| alignped1 | Generate plotting information for a pedigree |
| alignped2 | Generate plotting information for a pedigree |
| alignped3 | Generate plotting information for a pedigree |
| alignped4 | Generate plotting information for a pedigree |
| all,bdsmatrix-method | Class "bdsmatrix" |
| any,bdsmatrix-method | Class "bdsmatrix" |
| as.matrix.bdsmatrix | a function for bdsmatrix |
| as.matrix.gchol | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| as.matrix.gchol.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| as.vector.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| autohint | Align a pedigree to print well |
| bdsBlock | Block diagonal matrices. |
| bdsI | Sparse identity matrices |
| bdsmatrix | Create a sparse symmetric block diagonal matrix object |
| bdsmatrix-class | Class "bdsmatrix" |
| bdsmatrix.ibd | Create a bdsmatrix from a list |
| bdsmatrix.reconcile | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| besthint | Create a hints matrix for a pedigree. |
| coerce,bdsmatrix,matrix-method | Class "bdsmatrix" |
| coerce,bdsmatrix,vector-method | Class "bdsmatrix" |
| coerce,gchol,matrix-method | Class "gchol" |
| coerce,gchol.bdsmatrix,matrix-method | Class "gchol.bdsmatrix" |
| coxme | Fit a mixed-effects Cox model |
| coxme.control | Control parameters for coxme |
| coxme.fit | Fit a mixed-effects Cox model |
| coxme.varcheck | Fit a mixed-effects Cox model |
| diag,bdsmatrix-method | Class "bdsmatrix" |
| diag,gchol-method | Class "gchol" |
| diag,gchol.bdsmatrix-method | Class "gchol.bdsmatrix" |
| diag<-,bdsmatrix-method | Class "bdsmatrix" |
| dim,bdsmatrix-method | Class "bdsmatrix" |
| dim,gchol.bdsmatrix-method | Class "gchol.bdsmatrix" |
| dimnames,bdsmatrix-method | Class "bdsmatrix" |
| dimnames<-,bdsmatrix-method | Class "bdsmatrix" |
| familycheck | Error check for a family classification |
| gchol | Generalized Cholesky decompostion |
| gchol,matrix-method | Methods for Function gchol in Package 'kinship' |
| gchol-class | Class "gchol" |
| gchol-methods | Methods for Function gchol in Package 'kinship' |
| gchol.bdsmatrix | Generalized Cholesky decompostion |
| gchol.bdsmatrix-class | Class "gchol.bdsmatrix" |
| getCovariateFormula2 | Linear Mixed Effects model using a kinship matrix. |
| getCrossedTerms | Linear Mixed Effects model using a kinship matrix. |
| getGroupsFormula2 | Linear Mixed Effects model using a kinship matrix. |
| is.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| is.gchol.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| is.list.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| is.list.gchol.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| is.matrix.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| is.matrix.gchol.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
| kindepth | Compute a kinship matrix |
| kinship | Compute a kinship matrix |
| list or NULL-class | Class "list or NULL" |
| lmekin | Linear Mixed Effects model using a kinship matrix. |
| makefamid | Identify family groups |
| makekinship | Create a sparse kinship matrix |
| Math,bdsmatrix-method | Class "bdsmatrix" |
| Math2,bdsmatrix-method | Class "bdsmatrix" |
| max,bdsmatrix-method | Class "bdsmatrix" |
| min,bdsmatrix-method | Class "bdsmatrix" |
| Ops,bdsmatrix,bdsmatrix-method | Class "bdsmatrix" |
| Ops,bdsmatrix,numeric-method | Class "bdsmatrix" |
| Ops,numeric,bdsmatrix-method | Class "bdsmatrix" |
| pedigree | Create pedigree structure |
| plot.pedigree | plot pedigrees |
| print.bdsmatrix | Create a sparse symmetric block diagonal matrix object |
| print.coxme | Fit a mixed-effects Cox model |
| print.lmekin | Linear Mixed Effects model using a kinship matrix. |
| prod,bdsmatrix-method | Class "bdsmatrix" |
| range,bdsmatrix-method | Class "bdsmatrix" |
| show,bdsmatrix-method | Class "bdsmatrix" |
| show,gchol-method | Class "gchol" |
| show,gchol.bdsmatrix-method | Class "gchol.bdsmatrix" |
| solve.bdsmatrix | Solve a matrix equation using the generalized Cholesky decompostion |
| solve.gchol | Solve a matrix equation using the generalized Cholesky decompostion |
| solve.gchol.bdsmatrix | function solve for gchol.bdsmatrix |
| strata2 | Control parameters for coxme |
| sum,bdsmatrix-method | Class "bdsmatrix" |
| unique,bdsmatrix,missing-method | Class "bdsmatrix" |
| [,bdsmatrix-method | Class "bdsmatrix" |
| [,gchol.bdsmatrix-method | Class "gchol.bdsmatrix" |
| [.pedigree | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |