![[R logo]](../../../doc/html/logo.jpg)
A B C D E F I J L M N O P Q R S T U W
| activeCases | Calculator for Multi-State Path Models |
| activeCases,mspathCalculator-method | Calculator for Multi-State Path Models |
| activeCases-method | Calculator for Multi-State Path Models |
| activeCases<- | Calculator for Multi-State Path Models |
| activeCases<-,mspathCalculator,numeric-method | Calculator for Multi-State Path Models |
| activeCases<--methods | Calculator for Multi-State Path Models |
| addResult | Add a Job Run's Results to the Analyzer |
| addResult,runAnalyzer,runTime-method | Class "runTime" |
| alldone | Distributed Calculation Shut-Down |
| bitMask | Class "readingError" |
| bitMask,readingError-method | Class "readingError" |
| boolMask | Class "readingError" |
| boolMask,readingError-method | Class "readingError" |
| calculate | calculate |
| calculate,mspathCalculator,ANY,ANY,ANY-method | calculate |
| calculate,mspathDistributedCalculator,numeric,missing,missing-method | calculate |
| calculate-methods | calculate |
| checkpoint | Checkpointing and progress information |
| coef,mspath-method | Results of a multi-state path calculation |
| coef,mspathCoefficients-method | Class "mspathCoefficients" |
| coef,mspathEstimatedCoefficients-method | mspathEstimatedCoefficients |
| coef,mspathFull-method | Results of a multi-state path calculation |
| coef,readingError-method | Class "readingError" |
| cpuTime | Class "runTime" |
| cpuTime,runTime-method | Class "runTime" |
| deltamethod | The delta method |
| done | Finished with a Calculator |
| done,mspathCalculator-method | Finished with a Calculator |
| done,mspathDistributedCalculator-method | Finished with a Calculator |
| done-methods | Finished with a Calculator |
| doTrials | Run trials until told to stop |
| e2 | Allowed Misclassifications: e2 |
| effort | Get measures of effort to perform a calculation |
| effort,mspathCalculator-method | Get measures of effort to perform a calculation |
| effort-methods | Get measures of effort to perform a calculation |
| endTime | Class "runTime" |
| endTime,runTime-method | Class "runTime" |
| estimateWork | Estimate Amount of Work for Computations |
| estimateWork,mspathCalculator-method | Estimate Amount of Work for Computations |
| estimateWork-methods | Estimate Amount of Work for Computations |
| expit | Inverse logit function |
| fixedSchedule | fixedSchedule |
| isAllFixed | Test for fixed objects |
| isAllFixed,mspathCoefficients-method | Class "mspathCoefficients" |
| isAllFixed,mspathEstimatedCoefficients-method | Test for fixed objects |
| isAllFixed-methods | Test for fixed objects |
| job | Class "runTime" |
| job,runTime-method | Class "runTime" |
| logit | Logit function |
| master | Start Multi-State Path Model Distributed Calculations on Master Node |
| matrixCoef | Class "mspathCoefficients" |
| matrixCoef,mspath-method | Results of a multi-state path calculation |
| matrixCoef,mspathCoefficients-method | Class "mspathCoefficients" |
| matrixCoef-methods | Class "mspathCoefficients" |
| MatrixExp | Matrix exponential |
| mean,readingError-method | Class "readingError" |
| minus2loglik | Retrieve Multi-State Path Model Likelihood |
| minus2loglik,mspath-method | Results of a multi-state path calculation |
| minus2loglik,mspathCalculator-method | Retrieve Multi-State Path Model Likelihood |
| minus2loglik-methods | Retrieve Multi-State Path Model Likelihood |
| mpirank | Class "runTime" |
| mpirank,runTime-method | Class "runTime" |
| mpirank<- | Class "runTime" |
| mpirank<-,runTime,numeric-method | Class "runTime" |
| mspath | Multi-state Path-Dependent Models |
| mspath-class | Results of a multi-state path calculation |
| mspath.subset | subset a dataset based on estimated work |
| mspathAbstractCalculator-class | Calculator for Multi-State Path Models |
| mspathCalculator | Constructors for mspathCalculator Objects |
| mspathCalculator-class | Calculator for Multi-State Path Models |
| mspathCalculatorFromArgs | Constructors for mspathCalculator Objects |
| mspathCoefficients | Class "mspathCoefficients" |
| mspathCoefficients-class | Class "mspathCoefficients" |
| mspathDistributedCalculator | Constructors for mspathCalculator Objects |
| mspathDistributedCalculator-class | Distributed Calculator for Multi-State Path Models |
| mspathDistributedCalculatorFactory | Make a Constructor for mspathCalculator Objects |
| mspathEstimatedCoefficients | mspathEstimatedCoefficients |
| mspathEstimatedCoefficients-class | mspathEstimatedCoefficients |
| mspathFull-class | Results of a multi-state path calculation |
| nActiveCases | Calculator for Multi-State Path Models |
| nActiveCases,mspathCalculator-method | Calculator for Multi-State Path Models |
| nActiveCases-methods | Calculator for Multi-State Path Models |
| nBadNodes | Results of a multi-state path calculation |
| nBadNodes,mspath-method | Results of a multi-state path calculation |
| nBadNodes,mspathCalculator-method | Calculator for Multi-State Path Models |
| nBadNodes-methods | Results of a multi-state path calculation |
| nCases | Results of a multi-state path calculation |
| nCases,mspath-method | Results of a multi-state path calculation |
| nCases,mspathCalculator-method | Calculator for Multi-State Path Models |
| nCases-methods | Results of a multi-state path calculation |
| newRun | Class to Analyze Runtimes |
| newRun,runAnalyzer-method | Class to Analyze Runtimes |
| nGoodNodes | Results of a multi-state path calculation |
| nGoodNodes,mspath-method | Results of a multi-state path calculation |
| nGoodNodes,mspathCalculator-method | Calculator for Multi-State Path Models |
| nGoodNodes-methods | Results of a multi-state path calculation |
| nGoodPathNodes | Results of a multi-state path calculation |
| nGoodPathNodes,mspath-method | Results of a multi-state path calculation |
| nGoodPathNodes,mspathCalculator-method | Calculator for Multi-State Path Models |
| nGoodPathNodes-methods | Results of a multi-state path calculation |
| nGoodPaths | Results of a multi-state path calculation |
| nGoodPaths,mspath-method | Results of a multi-state path calculation |
| nGoodPaths,mspathCalculator-method | Calculator for Multi-State Path Models |
| nGoodPaths-methods | Results of a multi-state path calculation |
| optimizeWork | Calculator for Multi-State Path Models |
| optimizeWork,mspathCalculator,numeric,numeric-method | Calculator for Multi-State Path Models |
| optimizeWork-methods | Calculator for Multi-State Path Models |
| optresults | Results of a multi-state path calculation |
| optresults,mspath-method | Results of a multi-state path calculation |
| optresults-methods | Results of a multi-state path calculation |
| optresults<- | Results of a multi-state path calculation |
| optresults<-,mspath-method | Results of a multi-state path calculation |
| optresults<--methods | Results of a multi-state path calculation |
| params<- | Calculator for Multi-State Path Models |
| params<-,mspathCalculator,numeric-method | Calculator for Multi-State Path Models |
| params<-,mspathDistributedCalculator,numeric-method | Distributed Calculator for Multi-State Path Models |
| params<--methods | Calculator for Multi-State Path Models |
| print,mspath-method | Results of a multi-state path calculation |
| print,mspathCoefficients-method | Class "mspathCoefficients" |
| print,mspathEstimatedCoefficients-method | mspathEstimatedCoefficients |
| print,mspathFull-method | Results of a multi-state path calculation |
| printFooter | Results of a multi-state path calculation |
| printFooter,mspath-method | Results of a multi-state path calculation |
| printFooter-methods | Results of a multi-state path calculation |
| q2 | Allowed Transitions: q2 |
| readingError | Class "readingError" |
| readingError-class | Class "readingError" |
| remoteTime<- | Class "runTime" |
| remoteTime<-,runTime,numeric-method | Class "runTime" |
| results | Retrieve Results of Multi-State Path Calculation |
| results,mspathCalculator-method | Retrieve Results of Multi-State Path Calculation |
| results-methods | Retrieve Results of Multi-State Path Calculation |
| runAnalyzer | Class to Analyze Runtimes |
| runAnalyzer-class | Class to Analyze Runtimes |
| runeverywhere | Top Level of Distributed Calculation for Multi-State Path Model |
| runTime | runTime constructor |
| runTime-class | Class "runTime" |
| sd,mspath-method | Results of a multi-state path calculation |
| sd,mspathCoefficients-method | Class "mspathCoefficients" |
| sd,mspathEstimatedCoefficients-method | mspathEstimatedCoefficients |
| sd,mspathFull-method | Results of a multi-state path calculation |
| show,mspath-method | Results of a multi-state path calculation |
| show,mspathCoefficients-method | Class "mspathCoefficients" |
| show,mspathEstimatedCoefficients-method | mspathEstimatedCoefficients |
| sim1 | HCV Progression after liver transplant |
| sim2 | HCV Progression after liver transplant |
| sim3 | HCV Progression after liver transplant |
| simulateObservations | Calculator for Multi-State Path Models |
| simulateObservations,mspathCalculator-method | Calculator for Multi-State Path Models |
| simulateObservations-methods | Calculator for Multi-State Path Models |
| slave | Prepare for Distributed Multi-State Path Model Computations on Slaves |
| smoosh | Analyze Runtime Estimates and Actual Values |
| smoosh,runAnalyzer-method | Class to Analyze Runtimes |
| startTime | Class "runTime" |
| startTime,runTime-method | Class "runTime" |
| trial | Class "trial" |
| trial-class | Class "trial" |
| useActualTimes | Calculator for Multi-State Path Models |
| useActualTimes,mspathCalculator,numeric-method | Calculator for Multi-State Path Models |
| useActualTimes-methods | Calculator for Multi-State Path Models |
| waitTime | Class "runTime" |
| waitTime,runTime-method | Class "runTime" |
| wallTime | Class "runTime" |
| wallTime,runTime-method | Class "runTime" |