R Package for Fitting Stochastic General Epidemic Models

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Documentation for package ‘stochasticGEM’ version 0.0-1

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fLatentSEIR.MH Fit a partially observed SEIR general epidemic model with fixed latency duration.
getValidSEIR Fit a fully observed standard SIR general epidemic model
respiratory Removal times by age for a respiratory epidemic that occurred on the island of Tristan da Cunha, 1967
SEIR.MH Fit a partially observed SEIR general epidemic model.
SIR.MH Fit a partially observed Markovian/nonMarkovian SIR general epidemic model
SIR.MLE Fit a fully observed standard SIR general epidemic model
smallpox Removal times for smallpox data