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A B C D E F G H I K L M N O P Q R S T U W X Y misc
| surveillance-package | Outbreak detection algorithms for surveillance data |
| abattoir | Abattoir Data |
| aggregate,sts,ANY,ANY-method | Aggregate the the series of an sts object |
| aggregate,sts-method | Aggregate the the series of an sts object |
| aggregate.disProg | Aggregate the observed counts |
| alarms | Methods |
| alarms,sts-method | Class "sts" - surveillance time series |
| alarms-methods | Methods |
| alarms<- | Methods |
| alarms<-,sts-method | Class "sts" - surveillance time series |
| algo.bayes | The Bayes System |
| algo.bayes1 | The Bayes System |
| algo.bayes2 | The Bayes System |
| algo.bayes3 | The Bayes System |
| algo.bayesLatestTimepoint | The Bayes System |
| algo.call | Query Transmission to Specified Surveillance Systems |
| algo.cdc | The CDC Algorithm |
| algo.cdcLatestTimepoint | The CDC Algorithm |
| algo.compare | Comparison of Specified Surveillance Systems using Quality Values |
| algo.cusum | CUSUM method |
| algo.farrington | Surveillance for a time series using the Farrington procedure. |
| algo.farrington.assign.weights | Assign weights to base counts |
| algo.farrington.fitGLM | Fit the Poisson GLM of the Farrington procedure for a single time point |
| algo.farrington.threshold | Threshold computations using a two sided confidence interval |
| algo.glrnb | Cound data regression charts |
| algo.glrpois | Poisson regression charts |
| algo.hhh | Model fit based on the Held, Hoehle, Hofman paper |
| algo.hhh.grid | Function to try multiple starting values |
| algo.hmm | Hidden Markov Model (HMM) method |
| algo.quality | Computation of Quality Values for a Surveillance System Result |
| algo.rki | The system used at the RKI |
| algo.rki1 | The system used at the RKI |
| algo.rki2 | The system used at the RKI |
| algo.rki3 | The system used at the RKI |
| algo.rkiLatestTimepoint | The system used at the RKI |
| algo.rogerson | Modified CUSUM method as proposed by Rogerson and Yamada (2004) |
| algo.summary | Summary Table Generation for Several Disease Chains |
| algo.twins | Model fit based on a two-component epidemic model |
| anscombe.residuals | Compute Anscombe residuals |
| arlCusum | Calculation of Average Run Length for discrete CUSUM schemes |
| as.data.frame,sts-method | Class "sts" - surveillance time series |
| bayes | Multivariate Surveillance through independent univariate algorithms |
| bestCombination | Partition of a number into two factors |
| catcusum.LLRcompute | CUSUM detector for time-varying categorical time series |
| categoricalCUSUM | CUSUM detector for time-varying categorical time series |
| cdc | Multivariate Surveillance through independent univariate algorithms |
| CIdata | Confidence-Interval for the Mean of the Poisson Distribution |
| coef.ah | Model fit based on the Held, Hoehle, Hofman paper |
| coef.ahg | Function to try multiple starting values |
| colnames,sts,missing,missing-method | Class "sts" - surveillance time series |
| compMatrix.writeTable | Latex Table Generation |
| control | Methods |
| control,sts-method | Class "sts" - surveillance time series |
| control-methods | Methods |
| control<- | Methods |
| control<-,sts-method | Class "sts" - surveillance time series |
| correct53to52 | Data Correction from 53 to 52 weeks |
| create.disProg | Creating an object of class disProg |
| create.grid | Computes a matrix of initial values |
| cusum | Multivariate Surveillance through independent univariate algorithms |
| deleval | Surgical failures data |
| dim,sts-method | Class "sts" - surveillance time series |
| disProg2sts | Convert disProg object to sts and vice versa |
| enlargeData | Data Enlargement |
| epoch | Methods |
| epoch,sts-method | Class "sts" - surveillance time series |
| epoch-methods | Methods |
| epoch<- | Methods |
| epoch<-,sts-method | Class "sts" - surveillance time series |
| epochInYear | Methods |
| epochInYear,sts-method | Class "sts" - surveillance time series |
| epochInYear-methods | Methods |
| epochInYear<- | Methods |
| estimateGLRNbHook | Hook function for in-control mean estimation |
| estimateGLRPoisHook | Hook function for in-control mean estimation |
| farrington | Multivariate Surveillance through independent univariate algorithms |
| find.kh | Determine the k and h values in a standard normal setting |
| findH | Find decision interval for given in-control ARL and reference value |
| findK | Find reference value |
| glrnb | Multivariate Surveillance through independent univariate algorithms |
| glrpois | Multivariate Surveillance through independent univariate algorithms |
| h1_nrwrp | RKI SurvStat Data |
| ha | Hepatitis A in Berlin |
| hepatitisA | Hepatitis A in Germany |
| hmm | Multivariate Surveillance through independent univariate algorithms |
| hValues | Find decision interval for given in-control ARL and reference value |
| influMen | Influenza and meningococcal infections in Germany, 2001-2006 |
| initialize,sts-method | Class "sts" - surveillance time series |
| k1 | RKI SurvStat Data |
| LLR.fun | Run length computation of a CUSUM detector |
| loglikelihood | Calculation of the loglikelihood needed in algo.hhh |
| LRCUSUM.runlength | Run length computation of a CUSUM detector |
| m1 | RKI SurvStat Data |
| m2 | RKI SurvStat Data |
| m3 | RKI SurvStat Data |
| m4 | RKI SurvStat Data |
| m5 | RKI SurvStat Data |
| magic.dim | Returns a suitable k1 x k2 for plotting the disProgObj |
| make.design | Create the design matrices |
| makePlot | Plot Generation |
| meanResponse | Calculate mean response needed in algo.hhh |
| measles.weser | Measles epidemics in Lower Saxony in 2001-2002 |
| meningo.age | Meningococcal infections in France 1985-1995 |
| momo | Danish 1994-2008 all cause mortality data for six age groups |
| n1 | RKI SurvStat Data |
| n2 | RKI SurvStat Data |
| ncol,sts-method | Class "sts" - surveillance time series |
| nrow,sts-method | Class "sts" - surveillance time series |
| observed | Methods |
| observed,sts-method | Class "sts" - surveillance time series |
| observed-methods | Methods |
| observed<- | Methods |
| observed<-,sts-method | Class "sts" - surveillance time series |
| obsinyear | ~~ Methods for Function obsinyear ~~ |
| obsinyear,sts-method | ~~ Methods for Function obsinyear ~~ |
| obsinyear-methods | ~~ Methods for Function obsinyear ~~ |
| outcomeFunStandard | Run length computation of a CUSUM detector |
| pairedbinCUSUM | Paired binary CUSUM and its run-length computation |
| pairedbinCUSUM.LLRcompute | Paired binary CUSUM and its run-length computation |
| pairedbinCUSUM.runlength | Paired binary CUSUM and its run-length computation |
| plot | Display Methods for Surveillance Time-Series Objects |
| plot,sts,missing-method | Display Methods for Surveillance Time-Series Objects |
| plot.atwins | Plot results of a twins model fit |
| plot.disProg | Plot Generation of the Observed and the defined Outbreak States of a (multivariate) time series |
| plot.disProg.one | Plot Generation of the Observed and the defined Outbreak States of a (multivariate) time series |
| plot.sts.alarm | Display Methods for Surveillance Time-Series Objects |
| plot.sts.spacetime | Display Methods for Surveillance Time-Series Objects |
| plot.sts.time | Display Methods for Surveillance Time-Series Objects |
| plot.sts.time.one | Display Methods for Surveillance Time-Series Objects |
| plot.survRes | Plot a survRes object |
| plot.survRes.one | Plot a survRes object |
| population | Methods |
| population,sts-method | Class "sts" - surveillance time series |
| population-methods | Methods |
| population<- | Methods |
| population<-,sts-method | Class "sts" - surveillance time series |
| predict.ah | Predictions from a HHH model |
| predict.ahg | Predictions from a HHH model |
| primeFactors | Prime number factorization |
| print.ah | Model fit based on the Held, Hoehle, Hofman paper |
| print.ahg | Function to try multiple starting values |
| print.algoQV | Print quality value object |
| q1_nrwh | RKI SurvStat Data |
| q2 | RKI SurvStat Data |
| readData | Reading of Disease Data |
| refvalIdxByDate | Compute indices of reference value using Date class |
| residuals.ah | Residuals from a HHH model |
| residuals.ahg | Residuals from a HHH model |
| rki | Multivariate Surveillance through independent univariate algorithms |
| rogerson | Multivariate Surveillance through independent univariate algorithms |
| s1 | RKI SurvStat Data |
| s2 | RKI SurvStat Data |
| s3 | RKI SurvStat Data |
| salmonella.agona | Salmonella Agona cases in the UK 1990-1995 |
| shadar | Salmonella Hadar cases in Germany 2001-2006 |
| show,sts-method | Display Methods for Surveillance Time-Series Objects |
| sim.pointSource | Generation of Simulated Point Source Epidemy |
| sim.seasonalNoise | Generation of Background Noise for Simulated Timeseries |
| simHHH | Simulates data based on the model proposed by Held et. al (2005) |
| simHHH.ah | Simulates data based on the model proposed by Held et. al (2005) |
| simHHH.default | Simulates data based on the model proposed by Held et. al (2005) |
| stcd | Spatio-temporal cluster detection |
| sts-class | Class "sts" - surveillance time series |
| sts2disProg | Convert disProg object to sts and vice versa |
| sumNeighbours | Calculates the sum of counts of adjacent areas |
| surveillance | Outbreak detection algorithms for surveillance data |
| test | Print xtable for several diseases and the summary |
| testSim | Print xtable for a Simulated Disease and the Summary |
| toFileDisProg | Writing of Disease Data |
| upperbound | Methods |
| upperbound,sts-method | Class "sts" - surveillance time series |
| upperbound<- | Methods |
| upperbound<-,sts-method | Class "sts" - surveillance time series |
| wrap.algo | Multivariate Surveillance through independent univariate algorithms |
| xtable.algoQV | Xtable quality value object |
| year | Methods for Function year |
| year,sts-method | Methods for Function year |
| year-methods | Methods for Function year |
| [,sts,ANY,ANY,ANY-method | Methods for "[": Extraction or Subsetting in Package 'surveillance' |
| [,sts-method | Methods for "[": Extraction or Subsetting in Package 'surveillance' |
| [-methods | Methods for "[": Extraction or Subsetting in Package 'surveillance' |