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B C D F G H I L M N O P R S U V W Y misc
| unmarked-package | Models for Data from Unmarked Animals |
| backTransform | Methods for Function backTransform in Package 'unmarked' |
| backTransform,unmarkedEstimate-method | Methods for Function backTransform in Package 'unmarked' |
| backTransform,unmarkedFit-method | Methods for Function backTransform in Package 'unmarked' |
| backTransform,unmarkedLinComb-method | Methods for Function backTransform in Package 'unmarked' |
| backTransform-methods | Methods for Function backTransform in Package 'unmarked' |
| birds | BBS Point Count and Occurrence Data from 2 Bird Species |
| calcAreas | Prepare area argument for distsamp. |
| catbird | BBS Point Count and Occurrence Data from 2 Bird Species |
| catbird.bin | BBS Point Count and Occurrence Data from 2 Bird Species |
| coef,linCombOrBackTrans-method | Methods for Function coef in Package 'unmarked' |
| coef,unmarkedEstimate-method | Methods for Function coef in Package 'unmarked' |
| coef,unmarkedFit-method | Methods for Function coef in Package 'unmarked' |
| coef-methods | Methods for Function coef in Package 'unmarked' |
| colext | Fit the colonization-extinction model. |
| confint,unmarkedBackTrans-method | Methods for Function confint in Package 'unmarked' |
| confint,unmarkedEstimate-method | Methods for Function confint in Package 'unmarked' |
| confint,unmarkedFit-method | Methods for Function confint in Package 'unmarked' |
| confint,unmarkedLinComb-method | Methods for Function confint in Package 'unmarked' |
| confint-methods | Methods for Function confint in Package 'unmarked' |
| coordinates | Class "unmarkedFrame" |
| coordinates,unmarkedFrame-method | Class "unmarkedFrame" |
| coords | Class "unmarkedFrame" |
| csvToUMF | Convert .CSV File to an unmarkedFrame |
| detFuns | Detection functions used by distsamp |
| distsamp | Fit the hierarchical distance sampling model of Royle et al. (2004) |
| doublePiFun | Compute multinomial cell probabilities |
| fitList | constructor of unmarkedFitList objects |
| fitted,unmarkedFit-method | Methods for Function fitted in Package 'unmarked' |
| fitted,unmarkedFitColExt-method | Methods for Function fitted in Package 'unmarked' |
| fitted,unmarkedFitOccu-method | Methods for Function fitted in Package 'unmarked' |
| fitted,unmarkedFitOccuRN-method | Methods for Function fitted in Package 'unmarked' |
| fitted,unmarkedFitPCount-method | Methods for Function fitted in Package 'unmarked' |
| fitted-methods | Methods for Function fitted in Package 'unmarked' |
| formatDistData | Convert individual-level distance data to the transect-level format required by distsamp |
| formatLong | Convert between wide and long data formats. |
| formatMult | Create unmarkedMultFrame from Long Format Data Frame |
| formatWide | Convert between wide and long data formats. |
| frog2001pcru | 2001 Delaware North American Amphibian Monitoring Program Data |
| frog2001pfer | 2001 Delaware North American Amphibian Monitoring Program Data |
| frogs | 2001 Delaware North American Amphibian Monitoring Program Data |
| getData | Class "unmarkedFit" |
| getData,unmarkedFit-method | Class "unmarkedFit" |
| getP | Methods for Function getP in Package 'unmarked' |
| getP,unmarkedFit-method | Methods for Function getP in Package 'unmarked' |
| getP,unmarkedFitColExt-method | Methods for Function getP in Package 'unmarked' |
| getP,unmarkedFitDS-method | Methods for Function getP in Package 'unmarked' |
| getP,unmarkedFitMPois-method | Methods for Function getP in Package 'unmarked' |
| getP-methods | Methods for Function getP in Package 'unmarked' |
| getY | Class "unmarkedFrame" |
| getY,unmarkedFrame-method | Class "unmarkedFrame" |
| gf | Green frog count index data |
| gf.data | Green frog count index data |
| gf.obs | Green frog count index data |
| grexp | Detection functions used by distsamp |
| grhaz | Detection functions used by distsamp |
| grhn | Detection functions used by distsamp |
| gxexp | Detection functions used by distsamp |
| gxhaz | Detection functions used by distsamp |
| gxhn | Detection functions used by distsamp |
| head,unmarkedFrame-method | Class "unmarkedFrame" |
| hessian | Class "unmarkedFit" |
| hessian,unmarkedFit-method | Class "unmarkedFit" |
| hist,unmarkedFitDS-method | Class "unmarkedFit" |
| hist,unmarkedFrameDS-method | Class "unmarkedFrame" |
| imputeMissing | A function to impute missing entries in continuous obsCovs |
| lambda2psi | Convert Poisson mean (lambda) to probability of occurrence (psi). |
| linearComb | Methods for Function linearComb in Package 'unmarked' |
| linearComb,unmarkedEstimate,matrixOrVector-method | Methods for Function linearComb in Package 'unmarked' |
| linearComb,unmarkedFit,matrixOrVector-method | Methods for Function linearComb in Package 'unmarked' |
| linearComb-methods | Methods for Function linearComb in Package 'unmarked' |
| linetran | Simulated line transect data |
| mallard | Mallard count data |
| mallard.obs | Mallard count data |
| mallard.site | Mallard count data |
| mallard.y | Mallard count data |
| mapInfo | Class "unmarkedFrame" |
| masspcru | Massachusetts North American Amphibian Monitoring Program Data |
| mle | Class "unmarkedFit" |
| mle,unmarkedFit-method | Class "unmarkedFit" |
| modSel | Model selection results from an unmarkedFitList |
| modSel,unmarkedFitList-method | Class "unmarkedFitList" |
| modSel-methods | Model selection results from an unmarkedFitList |
| multinomPois | Multinomial-Poisson Mixtures |
| names,unmarkedEstimateList-method | Class "unmarkedEstimateList" |
| names,unmarkedFit-method | Class "unmarkedFit" |
| nllFun | Class "unmarkedFit" |
| nllFun,unmarkedFit-method | Class "unmarkedFit" |
| numSites | Class "unmarkedFrame" |
| numSites,unmarkedFrame-method | Class "unmarkedFrame" |
| numY | Class "unmarkedFrame" |
| numY,unmarkedFrame-method | Class "unmarkedFrame" |
| obsCovs | Class "unmarkedFrame" |
| obsCovs,unmarkedFrame-method | Class "unmarkedFrame" |
| obsCovs<- | Class "unmarkedFrame" |
| obsCovs<-,unmarkedFrame-method | Class "unmarkedFrame" |
| obsNum | Class "unmarkedFrame" |
| obsNum,unmarkedFrame-method | Class "unmarkedFrame" |
| obsToY | Class "unmarkedFrame" |
| obsToY,unmarkedFrame-method | Class "unmarkedFrame" |
| obsToY<- | Class "unmarkedFrame" |
| obsToY<-,unmarkedFrame-method | Class "unmarkedFrame" |
| occu | Fit the MacKenzie Occupancy Model |
| occuRN | Fit the Occupancy model of Royle and Nichols... |
| ovendata | Removal data for the Ovenbird |
| ovendata.list | Removal data for the Ovenbird |
| parboot | Evaluate goodness-of-fit of a fitted model. |
| parboot,unmarkedFit-method | Class "unmarkedFit" |
| pcount | Fit the N-mixture point count model... |
| pcru.bin | 2001 Delaware North American Amphibian Monitoring Program Data |
| pcru.data | 2001 Delaware North American Amphibian Monitoring Program Data |
| pcru.y | 2001 Delaware North American Amphibian Monitoring Program Data |
| pfer.bin | 2001 Delaware North American Amphibian Monitoring Program Data |
| pfer.data | 2001 Delaware North American Amphibian Monitoring Program Data |
| pfer.y | 2001 Delaware North American Amphibian Monitoring Program Data |
| piFuns | Compute multinomial cell probabilities |
| plot,parboot,missing-method | Evaluate goodness-of-fit of a fitted model. |
| plot,profile,missing-method | Class "unmarkedFit" |
| plot,unmarkedFit,missing-method | Class "unmarkedFit" |
| plot,unmarkedFrame,missing-method | Class "unmarkedFrame" |
| pointtran | Simulated point-transect data |
| powerAnalysis | Class "unmarkedFrame" |
| powerAnalysis,formula,unmarkedFramePCount,numeric-method | Class "unmarkedFrame" |
| predict,unmarkedFit-method | Class "unmarkedFit" |
| predict,unmarkedFitList-method | Class "unmarkedFitList" |
| profile,unmarkedFit-method | Class "unmarkedFit" |
| projection | Class "unmarkedFrame" |
| projection,unmarkedFrame-method | Class "unmarkedFrame" |
| removalPiFun | Compute multinomial cell probabilities |
| residuals,unmarkedFit-method | Class "unmarkedFit" |
| residuals,unmarkedFitOccu-method | Class "unmarkedFit" |
| residuals,unmarkedFitOccuRN-method | Class "unmarkedFit" |
| sampleSize | Class "unmarkedFit" |
| sampleSize,unmarkedFit-method | Class "unmarkedFit" |
| SE | Methods for Function SE in Package 'unmarked' |
| SE,linCombOrBackTrans-method | Methods for Function SE in Package 'unmarked' |
| SE,unmarkedEstimate-method | Methods for Function SE in Package 'unmarked' |
| SE,unmarkedFit-method | Methods for Function SE in Package 'unmarked' |
| SE-methods | Methods for Function SE in Package 'unmarked' |
| show,parboot-method | Evaluate goodness-of-fit of a fitted model. |
| show,unmarkedBackTrans-method | Methods for Function backTransform in Package 'unmarked' |
| show,unmarkedEstimate-method | Class "unmarkedEstimate" |
| show,unmarkedEstimateList-method | Class "unmarkedEstimateList" |
| show,unmarkedFit-method | Class "unmarkedFit" |
| show,unmarkedFrame-method | Class "unmarkedFrame" |
| show,unmarkedLinComb-method | Methods for Function linearComb in Package 'unmarked' |
| show,unmarkedModSel-method | Model selection results from an unmarkedFitList |
| sight2perpdist | Convert sight distance and sight angle to perpendicular distance. |
| simulate,unmarkedFitColExt-method | Methods for Function simulate in Package 'unmarked' |
| simulate,unmarkedFitDS-method | Methods for Function simulate in Package 'unmarked' |
| simulate,unmarkedFitMPois-method | Methods for Function simulate in Package 'unmarked' |
| simulate,unmarkedFitOccu-method | Methods for Function simulate in Package 'unmarked' |
| simulate,unmarkedFitOccuRN-method | Methods for Function simulate in Package 'unmarked' |
| simulate,unmarkedFitPCount-method | Methods for Function simulate in Package 'unmarked' |
| simulate-methods | Methods for Function simulate in Package 'unmarked' |
| siteCovs | Class "unmarkedFrame" |
| siteCovs,unmarkedFrame-method | Class "unmarkedFrame" |
| siteCovs<- | Class "unmarkedFrame" |
| siteCovs<-,unmarkedFrame-method | Class "unmarkedFrame" |
| summary,unmarkedEstimate-method | Class "unmarkedEstimate" |
| summary,unmarkedEstimateList-method | Class "unmarkedEstimateList" |
| summary,unmarkedFit-method | Class "unmarkedFit" |
| summary,unmarkedFitDS-method | Class "unmarkedFit" |
| summary,unmarkedFitList-method | Class "unmarkedFitList" |
| summary,unmarkedFrame-method | Class "unmarkedFrame" |
| summary,unmarkedFrameDS-method | Class "unmarkedFrame" |
| unmarked | Models for Data from Unmarked Animals |
| unmarkedEstimate | Class "unmarkedEstimate" |
| unmarkedEstimate-class | Class "unmarkedEstimate" |
| unmarkedEstimateList-class | Class "unmarkedEstimateList" |
| unmarkedFit | Class "unmarkedFit" |
| unmarkedFit-class | Class "unmarkedFit" |
| unmarkedFitDS-class | Class "unmarkedFit" |
| unmarkedFitList-class | Class "unmarkedFitList" |
| unmarkedFitMPois-class | Class "unmarkedFit" |
| unmarkedFitOccu-class | Class "unmarkedFit" |
| unmarkedFitPCount-class | Class "unmarkedFit" |
| unmarkedFrame | Create an unmarkedFrame, or one of its child classes. |
| unmarkedFrame-class | Class "unmarkedFrame" |
| unmarkedFrameDS | Create an unmarkedFrame, or one of its child classes. |
| unmarkedFrameDS-class | Class "unmarkedFrame" |
| unmarkedFrameMPois | Create an unmarkedFrame, or one of its child classes. |
| unmarkedFrameMPois-class | Class "unmarkedFrame" |
| unmarkedFrameOccu | Create an unmarkedFrame, or one of its child classes. |
| unmarkedFrameOccu-class | Class "unmarkedFrame" |
| unmarkedFramePCount | Create an unmarkedFrame, or one of its child classes. |
| unmarkedFramePCount-class | Class "unmarkedFrame" |
| unmarkedModSel-class | Model selection results from an unmarkedFitList |
| unmarkedMultFrame | Create an unmarkedMultFrame. |
| unmarkedMultFrame-class | Class "unmarkedFrame" |
| update,unmarkedFit-method | Class "unmarkedFit" |
| vcov,linCombOrBackTrans-method | Methods for Function vcov in Package 'unmarked' |
| vcov,unmarkedEstimate-method | Methods for Function vcov in Package 'unmarked' |
| vcov,unmarkedFit-method | Methods for Function vcov in Package 'unmarked' |
| vcov-methods | Methods for Function vcov in Package 'unmarked' |
| woodthrush | BBS Point Count and Occurrence Data from 2 Bird Species |
| woodthrush.bin | BBS Point Count and Occurrence Data from 2 Bird Species |
| yearlySiteCovs | Create an unmarkedMultFrame. |
| yearlySiteCovs,unmarkedMultFrame-method | Create an unmarkedMultFrame. |
| yearlySiteCovs<- | Create an unmarkedMultFrame. |
| yearlySiteCovs<-,unmarkedMultFrame-method | Create an unmarkedMultFrame. |
| [,unmarkedEstimateList,ANY,ANY,ANY-method | Methods for bracket extraction [ in Package 'unmarked' |
| [,unmarkedFit,ANY,ANY,ANY-method | Methods for bracket extraction [ in Package 'unmarked' |
| [,unmarkedFrame,missing,numeric,missing-method | Methods for bracket extraction [ in Package 'unmarked' |
| [,unmarkedFrame,numeric,missing,missing-method | Methods for bracket extraction [ in Package 'unmarked' |
| [,unmarkedFrame,numeric,numeric,missing-method | Methods for bracket extraction [ in Package 'unmarked' |
| [,unmarkedMultFrame,missing,numeric,missing-method | Methods for bracket extraction [ in Package 'unmarked' |
| [-methods | Methods for bracket extraction [ in Package 'unmarked' |