Testing examples for package 'base'
Testing examples for package 'tools'
  comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
Testing examples for package 'utils'
Testing examples for package 'grDevices'
  comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... NOTE
  3506a3507,3514
  > List of 3
  >  $ serif: chr [1:4] "Times-Roman" "Times-Bold" "Times-Italic" "Times-BoldItalic"
  >  $ sans : chr [1:4] "Helvetica" "Helvetica-Bold" "Helvetica-Oblique" "Helvetica-BoldOblique"
  >  $ mono : chr [1:4] "Courier" "Courier-Bold" "Courier-Oblique" "Courier-BoldOblique"
  > $mono
  > [1] "Courier"             "Courier-Bold"        "Courier-Oblique"    
  > [4] "Courier-BoldOblique"
  > 
  3748,3761d3755
  < > windowsFonts()
  < $serif
  < [1] "TT Times New Roman"
  < 
  < $sans
  < [1] "TT Arial"
  < 
  < $mono
  < [1] "TT Courier New"
  < 
  < > windowsFonts("mono")
  < $mono
  < [1] "TT Courier New"
  < 
Testing examples for package 'graphics'
  comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK
Testing examples for package 'stats'
  comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... OK
Testing examples for package 'datasets'
  comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK
Testing examples for package 'methods'
Testing examples for package 'grid'
  comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK
Testing examples for package 'splines'
  comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK
Testing examples for package 'stats4'
  comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK
Testing examples for package 'tcltk'
Testing examples for package 'compiler'
Testing examples for package 'parallel'
running strict specific tests
running code in 'eval-etc.R' ... OK
  comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK
running code in 'simple-true.R' ... OK
  comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK
running code in 'arith-true.R' ... OK
  comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK
running code in 'arith.R' ... OK
  comparing 'arith.Rout' to './arith.Rout.save' ... OK
running code in 'lm-tests.R' ... OK
  comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK
running code in 'ok-errors.R' ... OK
  comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK
running code in 'method-dispatch.R' ... OK
  comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK
running code in 'any-all.R' ... OK
  comparing 'any-all.Rout' to './any-all.Rout.save' ... OK
running code in 'd-p-q-r-tests.R' ... OK
  comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK
running sloppy specific tests
running code in 'complex.R' ... OK
  comparing 'complex.Rout' to './complex.Rout.save' ... OK
running code in 'eval-etc-2.R' ... OK
  comparing 'eval-etc-2.Rout' to './eval-etc-2.Rout.save' ... OK
running code in 'print-tests.R' ... OK
  comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK
running code in 'lapack.R' ... OK
  comparing 'lapack.Rout' to './lapack.Rout.save' ... OK
running code in 'datasets.R' ... OK
  comparing 'datasets.Rout' to './datasets.Rout.save' ... OK
running code in 'datetime.R' ... OK
  comparing 'datetime.Rout' to './datetime.Rout.save' ... OK
running code in 'iec60559.R' ... OK
  comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK
checking Sys.timezone ...
running code in 'timezone.R' ... OK
running regression tests ...
running code in 'array-subset.R' ... OK
running code in 'reg-tests-1a.R' ... OK
running code in 'reg-tests-1b.R' ... OK
running code in 'reg-tests-1c.R' ... OK
running code in 'reg-tests-1d.R' ... OK
running code in 'reg-tests-2.R' ... OK
  comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK
running code in 'reg-examples1.R' ... OK
running code in 'reg-examples2.R' ... OK
running code in 'reg-packages.R' ... OK
running code in 'p-qbeta-strict-tst.R' ... OK
running code in 'r-strict-tst.R' ... OK
running code in 'reg-IO.R' ... OK
  comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK
running code in 'reg-IO2.R' ... OK
  comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK
running code in 'reg-plot.R' ... OK
  comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK
running code in 'reg-S4-examples.R' ... OK
running code in 'reg-BLAS.R' ... OK
running code in 'reg-win.R' ... OK
running code in 'reg-tests-3.R' ... OK
  comparing 'reg-tests-3.Rout' to './reg-tests-3.Rout.save' ... OK
running code in 'reg-examples3.R' ... OK
  comparing 'reg-examples3.Rout' to './reg-examples3.Rout.save' ... OK
running tests of plotting Latin-1
  expect failure or some differences if not in a Latin-1 or UTF-8 locale
running code in 'reg-plot-latin1.R' ... OK
  comparing 'reg-plot-latin1.pdf' to './reg-plot-latin1.pdf.save' ... OK
running code in 'reg-S4.R' ... OK
  comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ... OK
running tests of Internet functions
running code in 'internet.R' ... OK
  comparing 'internet.Rout' to './internet.Rout.save' ... OK
running tests of date-time printing
  expect platform-specific differences
running code in 'datetime2.R' ... OK
  comparing 'datetime2.Rout' to './datetime2.Rout.save' ... OK
running tests of documentation examples
running code in 'R-intro.R' ... OK
  comparing 'R-intro.Rout' to './R-intro.Rout.save' ... OK
C:/Rtools/mingw_64/bin/gcc  -I"C:/projects/BUILD/R-source-win64/include" -DNDEBUG     -I"C:/projects/BUILD/R-source-win64/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c R-exts.c -o R-exts.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o R-exts.dll tmp.def R-exts.o -LC:/projects/BUILD/R-source-win64/extsoft/lib/x64 -LC:/projects/BUILD/R-source-win64/extsoft/lib -LC:/projects/BUILD/R-source-win64/bin/x64 -lR
running code in 'R-exts.R' ... OK
running tests of consistency of as/is.*
creating 'isas-tests.R'
running code in 'isas-tests.R' ... OK
  comparing 'isas-tests.Rout' to './isas-tests.Rout.save' ... OK
rm isas-tests.R
running tests of random deviate generation
running code in 'p-r-random-tests.R' ... OK
  comparing 'p-r-random-tests.Rout' to './p-r-random-tests.Rout.save' ... OK
running demos from base and stats
running code in 'demos.R' ... OK
  comparing 'demos.Rout' to './demos.Rout.save' ...110,111c110,111
< Number of all base objects:	1350
< Number of functions from these:	1307
---
> Number of all base objects:	1345
> Number of functions from these:	1302
 OK
running code in 'demos2.R' ... OK
running tests of primitives
running code in 'primitives.R' ... OK
running regexp regression tests
running more Internet and socket tests
running code in 'internet2.R' ... OK
running code in 'libcurl.R' ... OK
running tests of CRAN tools
  (can be slow unless mirror is local)
running code in 'CRANtools.R' ... OK
running tests to possibly trigger segfaults
creating 'no-segfault.R'
running code in 'no-segfault.R' ... OK
testing building standalone Rmath
check output can be found in src/nmath/standalone/check.log
checking package 'base'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/base.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-build-vignettes'
* looks like 'base' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: 'date', 'chron'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/projects/BUILD/R-source-win64/tests/base.Rcheck/00check.log'
for details.


checking package 'tools'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/tools.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-build-vignettes'
* looks like 'tools' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking R/sysdata.rda ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'Rd2HTML.R'
  Running 'S3.R'
  Running 'undoc.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'utils'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/utils.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-build-vignettes'
* looks like 'utils' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking R/sysdata.rda ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'Sweave-tst.R'
  Running 'completion.R'
  Running 'download.file.R'
 OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
  'Sweave.Rnw'... OK
 OK
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'grDevices'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/grDevices.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-build-vignettes'
* looks like 'grDevices' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'convertColor-tests.R'
  Running 'ps-tests.R'
  Comparing 'ps-tests.Rout' to 'ps-tests.Rout.save' ... OK
  Running 'saved-recordPlot.R'
  Running 'xfig-tests.R'
  Comparing 'xfig-tests.Rout' to 'xfig-tests.Rout.save' ... OK
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'graphics'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/graphics.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-build-vignettes'
* looks like 'graphics' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'vcd'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/projects/BUILD/R-source-win64/tests/graphics.Rcheck/00check.log'
for details.


checking package 'stats'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/stats.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-build-vignettes'
* looks like 'stats' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: 'coin', 'pcaPP', 'Kendall', 'SuppDists', 'pspearman', 'robustbase', 'multcomp'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'NLSstClosest.R'
  Running 'arimaML.R'
  Running 'bandwidth.R'
  Comparing 'bandwidth.Rout' to 'bandwidth.Rout.save' ... OK
  Running 'cmdscale.R'
  Running 'drop1-polr.R'
  Running 'glm-etc.R'
  Running 'glm.R'
  Comparing 'glm.Rout' to 'glm.Rout.save' ... OK
  Running 'ig_glm.R'
  Running 'ks-test.R'
  Comparing 'ks-test.Rout' to 'ks-test.Rout.save' ... OK
  Running 'nafns.R'
  Running 'nlm.R'
  Running 'nls.R'
  Comparing 'nls.Rout' to 'nls.Rout.save' ... OK
  Running 'offsets.R'
  Running 'ppr.R'
  Running 'simulate.R'
  Comparing 'simulate.Rout' to 'simulate.Rout.save' ... OK
  Running 'smooth.spline.R'
  Running 'ts-tests.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/projects/BUILD/R-source-win64/tests/stats.Rcheck/00check.log'
for details.


checking package 'datasets'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/datasets.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-build-vignettes'
* looks like 'datasets' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'methods'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/methods.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-build-vignettes'
* looks like 'methods' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'S3.R'
  Running 'basicRefClass.R'
  Running 'duplicateClass.R'
  Running 'envRefClass.R'
  Running 'fieldAssignments.R'
  Running 'mixinInitialize.R'
  Running 'namesAndSlots.R'
  Running 'nextWithDots.R'
  Running 'refClassExample.R'
  Running 'testConditionalIs.R'
  Running 'testGroupGeneric.R'
  Running 'testIs.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'grid'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/grid.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-build-vignettes'
* looks like 'grid' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'bugs.R'
  Running 'coords.R'
  Running 'reg.R'
  Running 'testls.R'
  Comparing 'testls.Rout' to 'testls.Rout.save' ... OK
  Running 'units.R'
 OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
  'displaylist.Rnw'... OK
  'frame.Rnw'... OK
  'grid.Rnw'... OK
  'grobs.Rnw'... OK
  'interactive.Rnw'... OK
  'locndimn.Rnw'... OK
  'moveline.Rnw'... OK
  'nonfinite.Rnw'... OK
  'plotexample.Rnw'... OK
  'rotated.Rnw'... OK
  'saveload.Rnw'... OK
  'sharing.Rnw'... OK
  'viewports.Rnw'... OK
 OK
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'splines'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/splines.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-build-vignettes'
* looks like 'splines' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'sparse-tst.R'
  Running 'spline-tst.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'stats4'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/stats4.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-build-vignettes'
* looks like 'stats4' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'confint.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'tcltk'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/tcltk.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-build-vignettes'
* looks like 'tcltk' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'compiler'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/compiler.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-build-vignettes'
* looks like 'compiler' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'assign.R'
  Running 'basics.R'
  Running 'const.R'
  Running 'curexpr.R'
  Running 'envir.R'
  Running 'jit.R'
  Running 'loop.R'
  Running 'srcref.R'
  Running 'switch.R'
  Running 'vischk.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'parallel'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/parallel.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-build-vignettes'
* looks like 'parallel' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  'compiler' 'tools'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'Master.R'
  Running 'RSeed.R'
 OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
  'parallel.Rnw'... OK
 NONE
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/projects/BUILD/R-source-win64/tests/parallel.Rcheck/00check.log'
for details.


checking package 'MASS'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/MASS.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'MASS/DESCRIPTION' ... OK
* this is package 'MASS' version '7.3-51.4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* skipping installation test
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/projects/BUILD/R-source-win64/library/MASS/libs/x64/MASS.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ... OK
* checking differences from 'MASS-Ex.Rout' to 'MASS-Ex.Rout.save' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'confint.R'
  Running 'fitdistr.R'
  Comparing 'fitdistr.Rout' to 'fitdistr.Rout.save' ... OK
  Running 'glm.nb.R'
  Running 'hubers.R'
  Running 'lme.R'
  Running 'polr.R'
  Running 'profile.R'
  Running 'regression.R'
  Comparing 'regression.Rout' to 'regression.Rout.save' ... OK
  Running 'rlm.R'
  Running 'scripts.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/projects/BUILD/R-source-win64/tests/MASS.Rcheck/00check.log'
for details.


checking package 'lattice'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/lattice.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'lattice/DESCRIPTION' ... OK
* this is package 'lattice' version '0.20-38'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'latticeExtra'

Package which this enhances but not available for checking: 'chron'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* skipping installation test
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'zoo'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/projects/BUILD/R-source-win64/library/lattice/libs/x64/lattice.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'MASSch04.R'
  Running 'dates.R'
  Running 'dotplotscoping.R'
  Running 'fontsize.R'
  Running 'levelplot.R'
  Running 'scales.R'
  Running 'summary.R'
  Running 'temp.R'
  Running 'test.R'
  Running 'wireframe.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/projects/BUILD/R-source-win64/tests/lattice.Rcheck/00check.log'
for details.


checking package 'Matrix'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/Matrix.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'Matrix/DESCRIPTION' ... OK
* this is package 'Matrix' version '1.2-17'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'expm'

Packages which this enhances but not available for checking:
  'MatrixModels', 'graph', 'SparseM', 'sfsmisc'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* skipping installation test
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: 'SparseM', 'spdep', 'expm', 'graph', 'igraph', 'sfsmisc', 'MatrixModels'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/projects/BUILD/R-source-win64/library/Matrix/libs/x64/Matrix.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'Class+Meth.R'
  Running 'Simple.R'
  Running 'abIndex-tsts.R'
  Running 'base-matrix-fun.R'
  Running 'bind.R'
  Comparing 'bind.Rout' to 'bind.Rout.save' ... OK
  Running 'dg_Matrix.R'
  Running 'dpo-test.R'
  Running 'dtpMatrix.R'
  Running 'factorizing.R'
  Running 'group-methods.R'
  Running 'indexing.R'
  Comparing 'indexing.Rout' to 'indexing.Rout.save' ... OK
  Running 'matprod.R'
  Running 'matr-exp.R'
  Running 'other-pkgs.R'
  Running 'spModel.matrix.R'
  Running 'validObj.R'
  Running 'write-read.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
  'Comparisons.Rnw'using 'UTF-8'... OK
  'Design-issues.Rnw'using 'UTF-8'... OK
  'Intro2Matrix.Rnw'using 'UTF-8'... OK
  'Introduction.Rnw'using 'UTF-8'... OK
  'sparseModels.Rnw'using 'UTF-8'... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/projects/BUILD/R-source-win64/tests/Matrix.Rcheck/00check.log'
for details.


checking package 'nlme'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/nlme.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'nlme/DESCRIPTION' ... OK
* this is package 'nlme' version '3.1-140'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'Hmisc'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* skipping installation test
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/projects/BUILD/R-source-win64/library/nlme/libs/x64/nlme.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'anova.gls.R'
  Running 'augPred_lab.R'
  Running 'augPredmissing.R'
  Running 'coef.R'
  Comparing 'coef.Rout' to 'coef.Rout.save' ... OK
  Running 'contrMat.R'
  Running 'data.frame.R'
  Running 'deparse.R'
  Running 'deviance.R'
  Running 'fitted.R'
  Running 'getData.R'
  Running 'gls.R'
  Running 'gnls-ch8.R'
  Running 'lmList.R'
  Running 'lme.R'
  Comparing 'lme.Rout' to 'lme.Rout.save' ... OK
  Running 'missing.R'
  Comparing 'missing.Rout' to 'missing.Rout.save' ... OK
  Running 'nlme-stall.R'
  Running 'nlme.R'
  Running 'nlme2.R'
  Running 'predict.lme.R'
  Running 'sigma-fixed-etc.R'
  Running 'updateLme.R'
  Running 'varIdent.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/projects/BUILD/R-source-win64/tests/nlme.Rcheck/00check.log'
for details.


checking package 'survival'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/survival.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'survival/DESCRIPTION' ... OK
* this is package 'survival' version '2.44-1.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* skipping installation test
* checking installed package size ... NOTE
  installed size is  7.3Mb
  sub-directories of 1Mb or more:
    doc     3.2Mb
    tests   1.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/projects/BUILD/R-source-win64/library/survival/libs/x64/survival.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'aareg.R'
  Comparing 'aareg.Rout' to 'aareg.Rout.save' ... OK
  Running 'anova.R'
  Comparing 'anova.Rout' to 'anova.Rout.save' ... OK
  Running 'bladder.R'
  Comparing 'bladder.Rout' to 'bladder.Rout.save' ... OK
  Running 'book1.R'
  Comparing 'book1.Rout' to 'book1.Rout.save' ... OK
  Running 'book2.R'
  Comparing 'book2.Rout' to 'book2.Rout.save' ... OK
  Running 'book3.R'
  Comparing 'book3.Rout' to 'book3.Rout.save' ... OK
  Running 'book4.R'
  Comparing 'book4.Rout' to 'book4.Rout.save' ... OK
  Running 'book5.R'
  Comparing 'book5.Rout' to 'book5.Rout.save' ... OK
  Running 'book6.R'
  Comparing 'book6.Rout' to 'book6.Rout.save' ... OK
  Running 'book7.R'
  Comparing 'book7.Rout' to 'book7.Rout.save' ... OK
  Running 'cancer.R'
  Comparing 'cancer.Rout' to 'cancer.Rout.save' ... OK
  Running 'clogit.R'
  Comparing 'clogit.Rout' to 'clogit.Rout.save' ... OK
  Running 'concordance.R'
  Comparing 'concordance.Rout' to 'concordance.Rout.save' ... OK
  Running 'concordance2.R'
  Comparing 'concordance2.Rout' to 'concordance2.Rout.save' ... OK
  Running 'concordance3.R'
  Comparing 'concordance3.Rout' to 'concordance3.Rout.save' ... OK
  Running 'counting.R'
  Comparing 'counting.Rout' to 'counting.Rout.save' ... OK
  Running 'coxsurv.R'
  Comparing 'coxsurv.Rout' to 'coxsurv.Rout.save' ... OK
  Running 'coxsurv2.R'
  Comparing 'coxsurv2.Rout' to 'coxsurv2.Rout.save' ... OK
  Running 'coxsurv3.R'
  Comparing 'coxsurv3.Rout' to 'coxsurv3.Rout.save' ... OK
  Running 'coxsurv4.R'
  Comparing 'coxsurv4.Rout' to 'coxsurv4.Rout.save' ... OK
  Running 'detail.R'
  Comparing 'detail.Rout' to 'detail.Rout.save' ... OK
  Running 'difftest.R'
  Comparing 'difftest.Rout' to 'difftest.Rout.save' ... OK
  Running 'doaml.R'
  Comparing 'doaml.Rout' to 'doaml.Rout.save' ... OK
  Running 'doweight.R'
  Comparing 'doweight.Rout' to 'doweight.Rout.save' ... OK
  Running 'expected.R'
  Comparing 'expected.Rout' to 'expected.Rout.save' ... OK
  Running 'expected2.R'
  Comparing 'expected2.Rout' to 'expected2.Rout.save' ... OK
  Running 'factor.R'
  Comparing 'factor.Rout' to 'factor.Rout.save' ... OK
  Running 'factor2.R'
  Comparing 'factor2.Rout' to 'factor2.Rout.save' ... OK
  Running 'finegray.R'
  Comparing 'finegray.Rout' to 'finegray.Rout.save' ... OK
  Running 'fr_cancer.R'
  Comparing 'fr_cancer.Rout' to 'fr_cancer.Rout.save' ... OK
  Running 'fr_kidney.R'
  Comparing 'fr_kidney.Rout' to 'fr_kidney.Rout.save' ... OK
  Running 'fr_lung.R'
  Comparing 'fr_lung.Rout' to 'fr_lung.Rout.save' ... OK
  Running 'fr_ovarian.R'
  Comparing 'fr_ovarian.Rout' to 'fr_ovarian.Rout.save' ... OK
  Running 'fr_rat1.R'
  Comparing 'fr_rat1.Rout' to 'fr_rat1.Rout.save' ... OK
  Running 'fr_rat2.R'
  Comparing 'fr_rat2.Rout' to 'fr_rat2.Rout.save' ... OK
  Running 'fr_resid.R'
  Comparing 'fr_resid.Rout' to 'fr_resid.Rout.save' ... OK
  Running 'fr_simple.R'
  Comparing 'fr_simple.Rout' to 'fr_simple.Rout.save' ... OK
  Running 'frailty.R'
  Comparing 'frailty.Rout' to 'frailty.Rout.save' ... OK
  Running 'frank.R'
  Comparing 'frank.Rout' to 'frank.Rout.save' ... OK
  Running 'infcox.R'
  Comparing 'infcox.Rout' to 'infcox.Rout.save' ... OK
  Running 'jasa.R'
  Comparing 'jasa.Rout' to 'jasa.Rout.save' ... OK
  Running 'model.matrix.R'
  Comparing 'model.matrix.Rout' to 'model.matrix.Rout.save' ... OK
  Running 'mstate.R'
  Comparing 'mstate.Rout' to 'mstate.Rout.save' ... OK
  Running 'nested.R'
  Comparing 'nested.Rout' to 'nested.Rout.save' ... OK
  Running 'ovarian.R'
  Comparing 'ovarian.Rout' to 'ovarian.Rout.save' ... OK
  Running 'prednew.R'
  Comparing 'prednew.Rout' to 'prednew.Rout.save' ... OK
  Running 'pspline.R'
  Comparing 'pspline.Rout' to 'pspline.Rout.save' ... OK
  Running 'pyear.R'
  Comparing 'pyear.Rout' to 'pyear.Rout.save' ... OK
  Running 'quantile.R'
  Comparing 'quantile.Rout' to 'quantile.Rout.save' ... OK
  Running 'r_donnell.R'
  Comparing 'r_donnell.Rout' to 'r_donnell.Rout.save' ... OK
  Running 'r_lung.R'
  Comparing 'r_lung.Rout' to 'r_lung.Rout.save' ... OK
  Running 'r_peterson.R'
  Comparing 'r_peterson.Rout' to 'r_peterson.Rout.save' ... OK
  Running 'r_resid.R'
  Comparing 'r_resid.Rout' to 'r_resid.Rout.save' ... OK
  Running 'r_sas.R'
  Comparing 'r_sas.Rout' to 'r_sas.Rout.save' ... OK
  Running 'r_scale.R'
  Comparing 'r_scale.Rout' to 'r_scale.Rout.save' ... OK
  Running 'r_stanford.R'
  Comparing 'r_stanford.Rout' to 'r_stanford.Rout.save' ... OK
  Running 'r_strata.R'
  Comparing 'r_strata.Rout' to 'r_strata.Rout.save' ... OK
  Running 'r_tdist.R'
  Comparing 'r_tdist.Rout' to 'r_tdist.Rout.save' ... OK
  Running 'r_user.R'
  Comparing 'r_user.Rout' to 'r_user.Rout.save' ... OK
  Running 'ratetable.R'
  Comparing 'ratetable.Rout' to 'ratetable.Rout.save' ... OK
  Running 'singtest.R'
  Comparing 'singtest.Rout' to 'singtest.Rout.save' ... OK
  Running 'strata2.R'
  Comparing 'strata2.Rout' to 'strata2.Rout.save' ... OK
  Running 'stratatest.R'
  Comparing 'stratatest.Rout' to 'stratatest.Rout.save' ... OK
  Running 'summary_survfit.R'
  Comparing 'summary_survfit.Rout' to 'summary_survfit.Rout.save' ... OK
  Running 'surv.R'
  Comparing 'surv.Rout' to 'surv.Rout.save' ... OK
  Running 'survSplit.R'
  Comparing 'survSplit.Rout' to 'survSplit.Rout.save' ... OK
  Running 'survfit1.R'
  Comparing 'survfit1.Rout' to 'survfit1.Rout.save' ... OK
  Running 'survfit2.R'
  Comparing 'survfit2.Rout' to 'survfit2.Rout.save' ... OK
  Running 'survreg1.R'
  Running 'survreg2.R'
  Comparing 'survreg2.Rout' to 'survreg2.Rout.save' ... OK
  Running 'survtest.R'
  Comparing 'survtest.Rout' to 'survtest.Rout.save' ... OK
  Running 'testci.R'
  Comparing 'testci.Rout' to 'testci.Rout.save' ... OK
  Running 'testci2.R'
  Comparing 'testci2.Rout' to 'testci2.Rout.save' ... OK
  Running 'testnull.R'
  Comparing 'testnull.Rout' to 'testnull.Rout.save' ... OK
  Running 'testreg.R'
  Comparing 'testreg.Rout' to 'testreg.Rout.save' ... OK
  Running 'tiedtime.R'
  Comparing 'tiedtime.Rout' to 'tiedtime.Rout.save' ... OK
  Running 'tmerge.R'
  Comparing 'tmerge.Rout' to 'tmerge.Rout.save' ... OK
  Running 'tmerge2.R'
  Comparing 'tmerge2.Rout' to 'tmerge2.Rout.save' ... OK
  Running 'tmerge3.R'
  Comparing 'tmerge3.Rout' to 'tmerge3.Rout.save' ... OK
  Running 'tt.R'
  Comparing 'tt.Rout' to 'tt.Rout.save' ... OK
  Running 'turnbull.R'
  Comparing 'turnbull.Rout' to 'turnbull.Rout.save' ... OK
  Running 'yates0.R'
  Comparing 'yates0.Rout' to 'yates0.Rout.save' ... OK
  Running 'yates1.R'
  Comparing 'yates1.Rout' to 'yates1.Rout.save' ... OK
  Running 'yates2.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
  'adjcurve.Rnw'... OK
  'compete.Rnw'... OK
  'concordance.Rnw'... OK
  'multi.Rnw'... OK
  'population.Rnw'... OK
  'splines.Rnw'... OK
  'survival.Rnw'... OK
  'tests.Rnw'... OK
  'tiedtimes.Rnw'... OK
  'timedep.Rnw'... OK
  'validate.Rnw'... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/projects/BUILD/R-source-win64/tests/survival.Rcheck/00check.log'
for details.


checking package 'boot'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/boot.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'boot/DESCRIPTION' ... OK
* this is package 'boot' version '1.3-22'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* skipping installation test
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking differences from 'boot-Ex.Rout' to 'boot-Ex.Rout.save' ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'cluster'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/cluster.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'cluster/DESCRIPTION' ... OK
* this is package 'cluster' version '2.1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* skipping installation test
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: 'mvoutlier', 'fpc', 'ellipse', 'sfsmisc'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/projects/BUILD/R-source-win64/library/cluster/libs/x64/cluster.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'agnes-ex.R'
  Comparing 'agnes-ex.Rout' to 'agnes-ex.Rout.save' ... OK
  Running 'clara-NAs.R'
  Comparing 'clara-NAs.Rout' to 'clara-NAs.Rout.save' ... OK
  Running 'clara-ex.R'
  Running 'clara.R'
  Comparing 'clara.Rout' to 'clara.Rout.save' ... OK
  Running 'clusplot-out.R'
  Comparing 'clusplot-out.Rout' to 'clusplot-out.Rout.save' ... OK
  Running 'daisy-ex.R'
  Comparing 'daisy-ex.Rout' to 'daisy-ex.Rout.save' ... OK
  Running 'diana-boots.R'
  Running 'diana-ex.R'
  Comparing 'diana-ex.Rout' to 'diana-ex.Rout.save' ... OK
  Running 'ellipsoid-ex.R'
  Comparing 'ellipsoid-ex.Rout' to 'ellipsoid-ex.Rout.save' ... OK
  Running 'fanny-ex.R'
  Running 'mona.R'
  Comparing 'mona.Rout' to 'mona.Rout.save' ... OK
  Running 'pam.R'
  Comparing 'pam.Rout' to 'pam.Rout.save' ... OK
  Running 'silhouette-default.R'
  Comparing 'silhouette-default.Rout' to 'silhouette-default.Rout.save' ... OK
  Running 'sweep-ex.R'
  Running 'withAutoprint.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/projects/BUILD/R-source-win64/tests/cluster.Rcheck/00check.log'
for details.


checking package 'codetools'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/codetools.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'codetools/DESCRIPTION' ... OK
* this is package 'codetools' version '0.2-16'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* skipping installation test
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'tests.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'foreign'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/foreign.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'foreign/DESCRIPTION' ... OK
* this is package 'foreign' version '0.8-71'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* skipping installation test
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/projects/BUILD/R-source-win64/library/foreign/libs/x64/foreign.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'S3.R'
  Comparing 'S3.Rout' to 'S3.Rout.save' ... OK
  Running 'arff.R'
  Comparing 'arff.Rout' to 'arff.Rout.save' ... OK
  Running 'download.R'
  Running 'minitab.R'
  Comparing 'minitab.Rout' to 'minitab.Rout.save' ... OK
  Running 'mval_bug.R'
  Comparing 'mval_bug.Rout' to 'mval_bug.Rout.save' ... OK
  Running 'octave.R'
  Comparing 'octave.Rout' to 'octave.Rout.save' ... OK
  Running 'sas.R'
  Running 'spss.R'
  Comparing 'spss.Rout' to 'spss.Rout.save' ... OK
  Running 'stata.R'
  Comparing 'stata.Rout' to 'stata.Rout.save' ... OK
  Running 'testEmpty.R'
  Comparing 'testEmpty.Rout' to 'testEmpty.Rout.save' ... OK
  Running 'writeForeignSPSS.R'
  Comparing 'writeForeignSPSS.Rout' to 'writeForeignSPSS.Rout.save' ... OK
  Running 'xport.R'
  Comparing 'xport.Rout' to 'xport.Rout.save' ... OK
 OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/projects/BUILD/R-source-win64/tests/foreign.Rcheck/00check.log'
for details.


checking package 'KernSmooth'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/KernSmooth.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'KernSmooth/DESCRIPTION' ... OK
* this is package 'KernSmooth' version '2.23-15'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* skipping installation test
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/projects/BUILD/R-source-win64/library/KernSmooth/libs/x64/KernSmooth.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'bkfe.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/projects/BUILD/R-source-win64/tests/KernSmooth.Rcheck/00check.log'
for details.


checking package 'rpart'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/rpart.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'rpart/DESCRIPTION' ... OK
* this is package 'rpart' version '4.1-15'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* skipping installation test
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'tree'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/projects/BUILD/R-source-win64/library/rpart/libs/x64/rpart.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking differences from 'rpart-Ex.Rout' to 'rpart-Ex.Rout.save' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'backticks.R'
  Comparing 'backticks.Rout' to 'backticks.Rout.save' ... OK
  Running 'cost.R'
  Comparing 'cost.Rout' to 'cost.Rout.save' ... OK
  Running 'cptest.R'
  Comparing 'cptest.Rout' to 'cptest.Rout.save' ... OK
  Running 'priors.R'
  Comparing 'priors.Rout' to 'priors.Rout.save' ... OK
  Running 'rescale.R'
  Comparing 'rescale.Rout' to 'rescale.Rout.save' ... OK
  Running 'testall.R'
  Comparing 'testall.Rout' to 'testall.Rout.save' ... OK
  Running 'treble.R'
  Comparing 'treble.Rout' to 'treble.Rout.save' ... OK
  Running 'treble2.R'
  Comparing 'treble2.Rout' to 'treble2.Rout.save' ... OK
  Running 'treble3.R'
  Comparing 'treble3.Rout' to 'treble3.Rout.save' ... OK
  Running 'treble4.R'
  Comparing 'treble4.Rout' to 'treble4.Rout.save' ... OK
  Running 'usersplits.R'
  Comparing 'usersplits.Rout' to 'usersplits.Rout.save' ... OK
  Running 'xpred1.R'
  Comparing 'xpred1.Rout' to 'xpred1.Rout.save' ... OK
  Running 'xpred2.R'
  Comparing 'xpred2.Rout' to 'xpred2.Rout.save' ... OK
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
  'longintro.Rnw'... OK
  'usercode.Rnw'... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/projects/BUILD/R-source-win64/tests/rpart.Rcheck/00check.log'
for details.


checking package 'class'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/class.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'class/DESCRIPTION' ... OK
* this is package 'class' version '7.3-15'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* skipping installation test
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/projects/BUILD/R-source-win64/library/class/libs/x64/class.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/projects/BUILD/R-source-win64/tests/class.Rcheck/00check.log'
for details.


checking package 'nnet'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/nnet.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'nnet/DESCRIPTION' ... OK
* this is package 'nnet' version '7.3-12'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* skipping installation test
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/projects/BUILD/R-source-win64/library/nnet/libs/x64/nnet.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/projects/BUILD/R-source-win64/tests/nnet.Rcheck/00check.log'
for details.


checking package 'spatial'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/spatial.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'spatial/DESCRIPTION' ... OK
* this is package 'spatial' version '7.3-11'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* skipping installation test
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/projects/BUILD/R-source-win64/library/spatial/libs/x64/spatial.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ... OK
* checking differences from 'spatial-Ex.Rout' to 'spatial-Ex.Rout.save' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/projects/BUILD/R-source-win64/tests/spatial.Rcheck/00check.log'
for details.


checking package 'mgcv'
* using log directory 'C:/projects/BUILD/R-source-win64/tests/mgcv.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'mgcv/DESCRIPTION' ... OK
* this is package 'mgcv' version '1.8-28'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* skipping installation test
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'gam'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/projects/BUILD/R-source-win64/library/mgcv/libs/x64/mgcv.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'bam.R'
  Running 'coxpht.R'
  Running 'gam.R'
  Running 'mgcv-parallel.R'
  Running 'missing.data.R'
  Running 'single.index.R'
  Running 'smooth.construct.so.smooth.spec.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/projects/BUILD/R-source-win64/tests/mgcv.Rcheck/00check.log'
for details.