# Design Package

A B C D E F G H I L M N O P Q R S T U V W

%ia% | Design Special Transformation Functions

## -- A --

anova.Design | Analysis of Variance (Wald and F Statistics)
asis | Design Special Transformation Functions

## -- B --

bj | Buckley-James Multiple Regression Model
bjplot | Buckley-James Multiple Regression Model
bootcov | Bootstrap Covariance and Distribution for Regression Coefficients
bootplot | Bootstrap Covariance and Distribution for Regression Coefficients

## -- C --

calibrate | Resampling Model Calibration
catg | Design Special Transformation Functions
confplot | Bootstrap Covariance and Distribution for Regression Coefficients
contrast | General Contrasts of Regression Coefficients
cph | Cox Proportional Hazards Model and Extensions
cr.setup | Continuation Ratio Ordinal Logistic Setup

## -- D --

datadensity | Plot Effects of Variables
datadensity.plot.Design | Plot Effects of Variables
datadist | Distribution Summaries for Predictor Variables
Design | Design Methods and Generic Functions
Design.Misc | Miscellaneous Design Attributes and Utility Functions
Design.Overview | Overview of Design Library
Design.trans | Design Special Transformation Functions
DesignFit | Miscellaneous Design Attributes and Utility Functions

## -- E --

effective.df | Trace AIC and BIC vs. Penalty

## -- F --

fastbw | Fast Backward Variable Selection
Function.cph | Compose an S Function to Compute X beta from a Fit
Function.Design | Compose an S Function to Compute X beta from a Fit

## -- G --

gendata | Generate Data Frame with Predictor Combinations
Getlim | Miscellaneous Design Attributes and Utility Functions
Getlimi | Miscellaneous Design Attributes and Utility Functions
glmD | Design Version of glm
glsD | Fit Linear Model Using Generalized Least Squares
groupkm | Kaplan-Meier Estimates vs. a Continuous Variable

## -- H --

Hazard | Parametric Survival Model
hazard.ratio.plot | Hazard Ratio Plot
histdensity | Bootstrap Covariance and Distribution for Regression Coefficients

## -- I --

ie.setup | Intervening Event Setup
interactions.containing | Miscellaneous Design Attributes and Utility Functions

## -- L --

latex | LaTeX Representation of a Fitted Model
latex.anova.Design | Analysis of Variance (Wald and F Statistics)
latex.bj | LaTeX Representation of a Fitted Model
latex.cph | LaTeX Representation of a Fitted Cox Model
latex.Design | LaTeX Representation of a Fitted Model
latex.glmD | LaTeX Representation of a Fitted Model
latex.glsD | LaTeX Representation of a Fitted Model
latex.lrm | LaTeX Representation of a Fitted Cox Model
latex.ols | LaTeX Representation of a Fitted Cox Model
latex.pphsm | LaTeX Representation of a Fitted Cox Model
latex.psm | LaTeX Representation of a Fitted Cox Model
latex.summary.Design | Summary of Effects in Model
latexDesign | LaTeX Representation of a Fitted Model
Legend | Plot Effects of Variables
legend.nomabbrev | Draw a Nomogram
Legend.plot.Design | Plot Effects of Variables
lines.perimeter | Plot Effects of Variables
lines.residuals.psm.censored.normalized | Parametric Survival Model
lrm | Logistic Regression Model
lrm.fit | Logistic Model Fitter
lrtest | Miscellaneous Design Attributes and Utility Functions
lsp | Design Special Transformation Functions

## -- M --

matinv | Total and Partial Matrix Inversion using Gauss-Jordan Sweep Operator
matrx | Design Special Transformation Functions
Mean.cph | Cox Proportional Hazards Model and Extensions
Mean.psm | Parametric Survival Model

## -- N --

Newlabels | Miscellaneous Design Attributes and Utility Functions
Newlevels | Miscellaneous Design Attributes and Utility Functions
nomogram | Draw a Nomogram
num.intercepts | Miscellaneous Design Attributes and Utility Functions

## -- O --

ols | Linear Model Estimation Using Ordinary Least Squares
oos.loglik | Miscellaneous Design Attributes and Utility Functions
Overview | Overview of Design Library

## -- P --

param.order | Miscellaneous Design Attributes and Utility Functions
pbind | Imputation of Repeated Measures
Penalty.matrix | Miscellaneous Design Attributes and Utility Functions
Penalty.setup | Miscellaneous Design Attributes and Utility Functions
pentrace | Trace AIC and BIC vs. Penalty
perimeter | Plot Effects of Variables
plot.anova.Design | Analysis of Variance (Wald and F Statistics)
plot.calibrate | Resampling Model Calibration
plot.Design | Plot Effects of Variables
plot.lrm.partial | Residuals from a Logistic Regression Model Fit
plot.pentrace | Trace AIC and BIC vs. Penalty
plot.sensuc | Sensitivity to Unmeasured Covariables
plot.summary.Design | Summary of Effects in Model
plot.val.prob | Validate Predicted Probabilities
plot.val.surv | Validate Predicted Probabilities
plot.validate.tree | Dxy and Mean Squared Error by Cross-validating a Tree Sequence
plot.xmean.ordinaly | Plot Mean X vs. Ordinal Y
pol | Design Special Transformation Functions
pphsm | Parametric Proportional Hazards form of AFT Models
predab.resample | Predictive Ability using Resampling
predict.bj | Predicted Values from Model Fit
predict.cph | Predicted Values from Model Fit
predict.Design | Predicted Values from Model Fit
predict.glmD | Predicted Values from Model Fit
predict.glsD | Predicted Values from Model Fit
predict.lrm | Predicted Values for Binary and Ordinal Logistic Models
predict.ols | Predicted Values from Model Fit
predict.psm | Predicted Values from Model Fit
predictDesign | Predicted Values from Model Fit
print.anova.Design | Analysis of Variance (Wald and F Statistics)
print.bj | Buckley-James Multiple Regression Model
print.calibrate | Resampling Model Calibration
print.contrast.Design | General Contrasts of Regression Coefficients
print.cph | Print cph Results
print.cph.fit | Print cph.fit
print.datadist | Distribution Summaries for Predictor Variables
print.Design | Miscellaneous Design Attributes and Utility Functions
print.fastbw | Fast Backward Variable Selection
print.glmD | Design Version of glm
print.glsD | Fit Linear Model Using Generalized Least Squares
print.lrm | Print lrm
print.lrtest | Miscellaneous Design Attributes and Utility Functions
print.nomogram | Draw a Nomogram
print.ols | Print ols
print.pentrace | Trace AIC and BIC vs. Penalty
print.plot.Design | Plot Effects of Variables
print.pphsm | Parametric Proportional Hazards form of AFT Models
print.psm | Parametric Survival Model
print.specs.Design | Design Specifications for Models
print.summary.Design | Summary of Effects in Model
print.survest.psm | Parametric Survival Estimates
print.val.prob | Validate Predicted Probabilities
print.validate.tree | Dxy and Mean Squared Error by Cross-validating a Tree Sequence
psm | Parametric Survival Model

## -- Q --

Quantile.cph | Cox Proportional Hazards Model and Extensions
Quantile.psm | Parametric Survival Model

## -- R --

rcs | Design Special Transformation Functions
related.predictors | Miscellaneous Design Attributes and Utility Functions
residuals.bj | Buckley-James Multiple Regression Model
residuals.cph | Residuals for a cph Fit
residuals.Design | Miscellaneous Design Attributes and Utility Functions
residuals.lrm | Residuals from a Logistic Regression Model Fit
residuals.ols | Residuals for ols
residuals.psm | Parametric Survival Model
rm.impute | Imputation of Repeated Measures
robcov | Robust Covariance Matrix Estimates

## -- S --

sascode | Compose an S Function to Compute X beta from a Fit
scored | Design Special Transformation Functions
sensuc | Sensitivity to Unmeasured Covariables
show.influence | Which Observations are Influential
specs | Design Specifications for Models
strat | Design Special Transformation Functions
summary.Design | Summary of Effects in Model
summary.survfit | Design version of survival Package summary.survfit
survest | Cox Survival Estimates
survest.psm | Parametric Survival Estimates
survfit | Modified Version of survival Package survfit Function
survfit.cph | Cox Predicted Survival
Survival | Parametric Survival Model
Survival.cph | Cox Proportional Hazards Model and Extensions
Survival.psm | Parametric Survival Model
survplot | Plot Survival Curves and Hazard Functions
survplot.residuals.psm.censored.normalized | Parametric Survival Model
survplot.survfit | Plot Survival Curves and Hazard Functions

## -- T --

text.anova.Design | Analysis of Variance (Wald and F Statistics)

## -- U --

univarLR | Miscellaneous Design Attributes and Utility Functions

## -- V --

val.prob | Validate Predicted Probabilities
val.surv | Validate Predicted Probabilities
validate | Resampling Validation of a Fitted Model's Indexes of Fit
validate.bj | Buckley-James Multiple Regression Model
validate.cph | Validation of a Fitted Cox or Parametric Survival Model's Indexes of Fit
validate.lrm | Resampling Validation of a Logistic Model
validate.ols | Validation of an Ordinary Linear Model
validate.psm | Validation of a Fitted Cox or Parametric Survival Model's Indexes of Fit
validate.rpart | Dxy and Mean Squared Error by Cross-validating a Tree Sequence
validate.tree | Dxy and Mean Squared Error by Cross-validating a Tree Sequence
Varcov.cph | Miscellaneous Design Attributes and Utility Functions
Varcov.glmD | Miscellaneous Design Attributes and Utility Functions
Varcov.glsD | Miscellaneous Design Attributes and Utility Functions
Varcov.lrm | Miscellaneous Design Attributes and Utility Functions
Varcov.ols | Miscellaneous Design Attributes and Utility Functions
Varcov.psm | Miscellaneous Design Attributes and Utility Functions
vif | Variance Inflation Factors

## -- W --

which.influence | Which Observations are Influential