Entry: boa-internal
Aliases: boa.menu.analysis boa.menu.chains boa.menu.coda boa.menu.data boa.menu.file boa.menu.import boa.menu.par boa.menu.parms boa.menu.plot boa.menu.plotcoda boa.menu.plotdesc boa.menu.setpar boa.menu.stats boa.menu.window key
Keywords: internal
Description: Internal BOA Functions
URL: ../../../library/boa/html/boa-internal.html

Entry: boa.acf
Aliases: boa.acf
Keywords: internal
Description: Autocorrelation Function
URL: ../../../library/boa/html/boa.acf.html

Entry: boa.batchMeans
Aliases: boa.batchMeans
Keywords: internal
Description: Batch Means
URL: ../../../library/boa/html/boa.batchMeans.html

Entry: boa.chain.add
Aliases: boa.chain.add
Keywords: utilities
Description: Add MCMC Sequence
URL: ../../../library/boa/html/boa.chain.add.html

Entry: boa.chain.collapse
Aliases: boa.chain.collapse
Keywords: utilities
Description: Concatenate MCMC Sequences
URL: ../../../library/boa/html/boa.chain.collapse.html

Entry: boa.chain.del
Aliases: boa.chain.del
Keywords: utilities
Description: Delete MCMC Sequences
URL: ../../../library/boa/html/boa.chain.del.html

Entry: boa.chain.eval
Aliases: boa.chain.eval
Keywords: utilities
Description: Formulate New Parameter
URL: ../../../library/boa/html/boa.chain.eval.html

Entry: boa.chain.gandr
Aliases: boa.chain.gandr
Keywords: internal
Description: Gelman and Rubin Convergence Diagnostics
URL: ../../../library/boa/html/boa.chain.gandr.html

Entry: boa.chain.import
Aliases: boa.chain.import
Keywords: utilities
Description: Import MCMC Sequence
URL: ../../../library/boa/html/boa.chain.import.html

Entry: boa.chain.info
Aliases: boa.chain.info
Keywords: internal
Description: Information about MCMC Sequences
URL: ../../../library/boa/html/boa.chain.info.html

Entry: boa.chain
Aliases: boa.chain
Keywords: internal
Description: Session Lists of MCMC Sequences
URL: ../../../library/boa/html/boa.chain.html

Entry: boa.chain.reset
Aliases: boa.chain.reset
Keywords: utilities
Description: Reset MCMC Sequences
URL: ../../../library/boa/html/boa.chain.reset.html

Entry: boa.chain.subset
Aliases: boa.chain.subset
Keywords: utilities
Description: Subset MCMC Sequences
URL: ../../../library/boa/html/boa.chain.subset.html

Entry: boa.chain.support
Aliases: boa.chain.support
Keywords: utilities
Description: Set Support for Parameters
URL: ../../../library/boa/html/boa.chain.support.html

Entry: boa.getiter
Aliases: boa.getiter
Keywords: internal
Description: Extract Iterations
URL: ../../../library/boa/html/boa.getiter.html

Entry: boa.getparms
Aliases: boa.getparms
Keywords: internal
Description: Extract Parameters
URL: ../../../library/boa/html/boa.getparms.html

Entry: boa.geweke
Aliases: boa.geweke
Keywords: internal
Description: Geweke Convergence Diagnostics
URL: ../../../library/boa/html/boa.geweke.html

Entry: boa.gewekePwr
Aliases: boa.gewekePwr
Keywords: internal
Description: Geweke Spectral Density Estimation
URL: ../../../library/boa/html/boa.gewekePwr.html

Entry: boa.handw
Aliases: boa.handw
Keywords: internal
Description: Heidelberger and Welch Convergence Diagnostics
URL: ../../../library/boa/html/boa.handw.html

Entry: boa.hpd
Aliases: boa.hpd
Keywords: internal
Description: Highest Probability Density Interval
URL: ../../../library/boa/html/boa.hpd.html

Entry: boa.importASCII
Aliases: boa.importASCII
Keywords: internal
Description: Import ASCII Data
URL: ../../../library/boa/html/boa.importASCII.html

Entry: boa.importBUGS
Aliases: boa.importBUGS
Keywords: internal
Description: Import BUGS Data
URL: ../../../library/boa/html/boa.importBUGS.html

Entry: boa.init
Aliases: boa.init
Keywords: utilities
Description: Start Session
URL: ../../../library/boa/html/boa.init.html

Entry: boa.iter
Aliases: boa.iter
Keywords: internal
Description: Extract Iteration Numbers
URL: ../../../library/boa/html/boa.iter.html

Entry: boa.license
Aliases: boa.license
Keywords: utilities
Description: Licensing Information
URL: ../../../library/boa/html/boa.license.html

Entry: boa.load
Aliases: boa.load
Keywords: utilities
Description: Load Session
URL: ../../../library/boa/html/boa.load.html

Entry: boa.menu
Aliases: boa.menu
Keywords: interface
Description: Interactive BOA Menu
URL: ../../../library/boa/html/boa.menu.html

Entry: boa.par
Aliases: boa.par
Keywords: utilities
Description: Global Parameters
URL: ../../../library/boa/html/boa.par.html

Entry: boa.pardesc
Aliases: boa.pardesc
Keywords: internal
Description: Global Parameters Descriptions
URL: ../../../library/boa/html/boa.pardesc.html

Entry: boa.plot.acf
Aliases: boa.plot.acf
Keywords: hplot
Description: Plot Autocorrelation Function
URL: ../../../library/boa/html/boa.plot.acf.html

Entry: boa.plot.bandg
Aliases: boa.plot.bandg
Keywords: hplot
Description: Plot Brooks and Gelman Multivariate Shrink Factors
URL: ../../../library/boa/html/boa.plot.bandg.html

Entry: boa.plot.close
Aliases: boa.plot.close
Keywords: utilities
Description: Close Graphics Windows
URL: ../../../library/boa/html/boa.plot.close.html

Entry: boa.plot.density
Aliases: boa.plot.density
Keywords: hplot
Description: Plot Density Functions
URL: ../../../library/boa/html/boa.plot.density.html

Entry: boa.plot.gandr
Aliases: boa.plot.gandr
Keywords: hplot
Description: Plot Gelman and Rubin Shrink Factors
URL: ../../../library/boa/html/boa.plot.gandr.html

Entry: boa.plot.geweke
Aliases: boa.plot.geweke
Keywords: hplot
Description: Plot Geweke Convergence Diagnostics
URL: ../../../library/boa/html/boa.plot.geweke.html

Entry: boa.plot.history
Aliases: boa.plot.history
Keywords: hplot
Description: Plot Parameter Estimation Histories
URL: ../../../library/boa/html/boa.plot.history.html

Entry: boa.plot.open
Aliases: boa.plot.open
Keywords: utilities
Description: Open Graphics Windows
URL: ../../../library/boa/html/boa.plot.open.html

Entry: boa.plot.par
Aliases: boa.plot.par
Keywords: utilities
Description: Set Plotting Parameters
URL: ../../../library/boa/html/boa.plot.par.html

Entry: boa.plot
Aliases: boa.plot
Keywords: hplot
Description: Plot Parameters in MCMC Sequences
URL: ../../../library/boa/html/boa.plot.html

Entry: boa.plot.title
Aliases: boa.plot.title
Keywords: utilities
Description: Add Plot Title
URL: ../../../library/boa/html/boa.plot.title.html

Entry: boa.plot.trace
Aliases: boa.plot.trace
Keywords: hplot
Description: Plot Trace Histories
URL: ../../../library/boa/html/boa.plot.trace.html

Entry: boa.pnames
Aliases: boa.pnames
Keywords: internal
Description: Extract Parameter Names
URL: ../../../library/boa/html/boa.pnames.html

Entry: boa.print.acf
Aliases: boa.print.acf
Keywords: print
Description: Print Autocorrelation Functions
URL: ../../../library/boa/html/boa.print.acf.html

Entry: boa.print.cor
Aliases: boa.print.cor
Keywords: print
Description: Print Correlation Matrices
URL: ../../../library/boa/html/boa.print.cor.html

Entry: boa.print.gandr
Aliases: boa.print.gandr
Keywords: print
Description: Print Gelman and Rubin Convergence Diagnostics
URL: ../../../library/boa/html/boa.print.gandr.html

Entry: boa.print.geweke
Aliases: boa.print.geweke
Keywords: print
Description: Print Geweke Convergence Diagnostics
URL: ../../../library/boa/html/boa.print.geweke.html

Entry: boa.print.handw
Aliases: boa.print.handw
Keywords: print
Description: Print Heidelberger and Welch Convergence Diagnostics
URL: ../../../library/boa/html/boa.print.handw.html

Entry: boa.print.hpd
Aliases: boa.print.hpd
Keywords: print
Description: Print Highest Probability Density Intervals
URL: ../../../library/boa/html/boa.print.hpd.html

Entry: boa.print.info
Aliases: boa.print.info
Keywords: print
Description: Print Information about MCMC Sequences
URL: ../../../library/boa/html/boa.print.info.html

Entry: boa.print.par
Aliases: boa.print.par
Keywords: print
Description: Print Global Parameters' Descriptions and Current Values
URL: ../../../library/boa/html/boa.print.par.html

Entry: boa.print.randl
Aliases: boa.print.randl
Keywords: print
Description: Print Raftery and Lewis Convergence Diagnostics
URL: ../../../library/boa/html/boa.print.randl.html

Entry: boa.print.stats
Aliases: boa.print.stats
Keywords: print
Description: Print Summary Statistics
URL: ../../../library/boa/html/boa.print.stats.html

Entry: boa.quit
Aliases: boa.quit
Keywords: utilities
Description: Quit Session
URL: ../../../library/boa/html/boa.quit.html

Entry: boa.randl
Aliases: boa.randl
Keywords: internal
Description: Raftery and Lewis Convergence Diagnostics
URL: ../../../library/boa/html/boa.randl.html

Entry: boa.save
Aliases: boa.save
Keywords: utilities
Description: Save Session
URL: ../../../library/boa/html/boa.save.html

Entry: boa.sortiter
Aliases: boa.sortiter
Keywords: internal
Description: Sort by Iteration Numbers
URL: ../../../library/boa/html/boa.sortiter.html

Entry: boa.sortparms
Aliases: boa.sortparms
Keywords: internal
Description: Sort by Parameter Names
URL: ../../../library/boa/html/boa.sortparms.html

Entry: boa.stats
Aliases: boa.stats
Keywords: internal
Description: Summary Statistics
URL: ../../../library/boa/html/boa.stats.html

Entry: boa.transform
Aliases: boa.transform
Keywords: internal
Description: Transform Variables
URL: ../../../library/boa/html/boa.transform.html

Entry: boa.version
Aliases: boa.version
Keywords: utilities
Description: Version Information
URL: ../../../library/boa/html/boa.version.html

Entry: colVars
Aliases: colVars
Keywords: internal
Description: Column Variances
URL: ../../../library/boa/html/colVars.html

Entry: line
Aliases: line line1 line2
Keywords: datasets
Description: BUGS Line Example
URL: ../../../library/boa/html/line.html
