* checking for working latex ... OK * using log directory 'd:/Rcompile/CRANpkg/check/1.8/PHYLOGR.Rcheck' * checking for file 'PHYLOGR/DESCRIPTION' ... OK * checking if this is a source package ... OK ---------- Making package PHYLOGR ------------ adding build stamp to DESCRIPTION installing R files installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'PHYLOGR' Formats: text html latex example GarlandJanis.IC text html latex example GarlandJanis.Original text html latex example GarlandJanis.varcov text html latex example Helper.functions text html latex Lacertid.IC text html latex example Lacertid.Original text html latex example Lacertid.varcov text html latex example SimulExample text html latex example cancor.phylog text html latex example cor.origin text html latex example lm.phylog text html latex example matrix.D text html latex example phylog.gls.fit text html latex example plot.phylog.cancor text html latex example plot.phylog.lm text html latex example plot.phylog.prcomp text html latex example prcomp.phylog text html latex example print.summary.phylog text html latex example read.inp.data text html latex example read.pdi.data text html latex example read.phylip.data text html latex example read.phylog.matrix text html latex example read.sim.data text html latex example summary.phylog.cancor text html latex example summary.phylog.lm text html latex example summary.phylog.prcomp text html latex example >>> Building/Updating help pages for package 'PHYLOGR' Formats: chm GarlandJanis.IC chm GarlandJanis.Original chm GarlandJanis.varcov chm Helper.functions chm Lacertid.IC chm Lacertid.Original chm Lacertid.varcov chm SimulExample chm cancor.phylog chm cor.origin chm lm.phylog chm matrix.D chm phylog.gls.fit chm plot.phylog.cancor chm plot.phylog.lm chm plot.phylog.prcomp chm prcomp.phylog chm print.summary.phylog chm read.inp.data chm read.pdi.data chm read.phylip.data chm read.phylog.matrix chm read.sim.data chm summary.phylog.cancor chm summary.phylog.lm chm summary.phylog.prcomp chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\Rcompile\CRANpkg\check\1.8\PHYLOGR\chm\PHYLOGR.chm Compile time: 0 minutes, 2 seconds 27 Topics 118 Local links 0 Internet links 1 Graphic Created d:\Rcompile\CRANpkg\check\1.8\PHYLOGR\chm\PHYLOGR.chm, 61,127 bytes Compression decreased file by 47,029 bytes. adding MD5 sums installing R.css in d:/Rcompile/CRANpkg/check/1.8/PHYLOGR.Rcheck * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking package dependencies ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking for replacement functions with final arg not named 'value' ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating PHYLOGR-Ex.R ... OK * checking examples ... OK * creating PHYLOGR-manual.tex ... OK * checking PHYLOGR-manual.tex ... OK