* checking for working latex ... OK * using log directory 'd:/Rcompile/CRANpkg/check/1.8/gstat.Rcheck' * checking for file 'gstat/DESCRIPTION' ... OK * checking if this is a source package ... OK ---------- Making package gstat ------------ adding build stamp to DESCRIPTION installing NAMESPACE file making DLL ... making block.d from block.c making chfactor.d from chfactor.c making copy.d from copy.c making data.d from data.c making direct.d from direct.c making err.d from err.c making fit.d from fit.c making getest.d from getest.c making gls.d from gls.c making glvars.d from glvars.c making hsehldr.d from hsehldr.c making init.d from init.c making ivecop.d from ivecop.c making lex.d from lex.c making lm.d from lm.c making lufactor.d from lufactor.c making machine.d from machine.c making mapio.d from mapio.c making matop.d from matop.c making matrixio.d from matrixio.c making meminfo.d from meminfo.c making memory.d from memory.c making memstat.d from memstat.c making msim.d from msim.c making norm.d from norm.c making nsearch.d from nsearch.c making otherio.d from otherio.c making parse.d from parse.c making plot.d from plot.c making polygon.d from polygon.c making pqueue.d from pqueue.c making predict.d from predict.c making pxop.d from pxop.c making qrfactor.d from qrfactor.c making random.d from random.c making read.d from read.c making reml.d from reml.c making report.d from report.c making s.d from s.c making select.d from select.c making sem.d from sem.c making sim.d from sim.c making solve.d from solve.c making sparse.d from sparse.c making sparseio.d from sparseio.c making spbkp.d from spbkp.c making spchfctr.d from spchfctr.c making splufctr.d from splufctr.c making sprow.d from sprow.c making spswap.d from spswap.c making stat.d from stat.c making submat.d from submat.c making userio.d from userio.c making utils.d from utils.c making vario.d from vario.c making vario_fn.d from vario_fn.c making vario_io.d from vario_io.c making vecop.d from vecop.c making version.d from version.c making writecmd.d from writecmd.c making xvalid.d from xvalid.c gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c block.c -o block.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c chfactor.c -o chfactor.o chfactor.c: In function `LDLfactor': chfactor.c:117: warning: dereferencing type-punned pointer will break strict-aliasing rules chfactor.c: At top level: chfactor.c:32: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c copy.c -o copy.o copy.c:27: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c data.c -o data.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c direct.c -o direct.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c err.c -o err.o err.c:34: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c fit.c -o fit.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c getest.c -o getest.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c gls.c -o gls.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c glvars.c -o glvars.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c hsehldr.c -o hsehldr.o hsehldr.c: In function `hhtrcols': hsehldr.c:152: warning: dereferencing type-punned pointer will break strict-aliasing rules hsehldr.c: At top level: hsehldr.c:36: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c init.c -o init.o init.c:33: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c ivecop.c -o ivecop.o ivecop.c:32: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c lex.c -o lex.o lex.l:548: warning: `yyunput' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c lm.c -o lm.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c lufactor.c -o lufactor.o lufactor.c: In function `LUfactor': lufactor.c:61: warning: dereferencing type-punned pointer will break strict-aliasing rules lufactor.c: In function `m_inverse': lufactor.c:198: warning: dereferencing type-punned pointer will break strict-aliasing rules lufactor.c:199: warning: dereferencing type-punned pointer will break strict-aliasing rules lufactor.c:200: warning: dereferencing type-punned pointer will break strict-aliasing rules lufactor.c:201: warning: dereferencing type-punned pointer will break strict-aliasing rules lufactor.c: In function `LUcondest': lufactor.c:236: warning: dereferencing type-punned pointer will break strict-aliasing rules lufactor.c:237: warning: dereferencing type-punned pointer will break strict-aliasing rules lufactor.c:221: warning: `cond_est' might be used uninitialized in this function lufactor.c: At top level: lufactor.c:32: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c machine.c -o machine.o machine.c:34: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c mapio.c -o mapio.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c matop.c -o matop.o matop.c:33: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c matrixio.c -o matrixio.o matrixio.c:34: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c meminfo.c -o meminfo.o meminfo.c:44: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c memory.c -o memory.o memory.c: In function `v_get_vars': memory.c:508: warning: suggest parentheses around assignment used as truth value memory.c: In function `iv_get_vars': memory.c:525: warning: suggest parentheses around assignment used as truth value memory.c: In function `m_get_vars': memory.c:541: warning: suggest parentheses around assignment used as truth value memory.c: In function `px_get_vars': memory.c:557: warning: suggest parentheses around assignment used as truth value memory.c: In function `v_resize_vars': memory.c:589: warning: suggest parentheses around assignment used as truth value memory.c: In function `iv_resize_vars': memory.c:607: warning: suggest parentheses around assignment used as truth value memory.c: In function `m_resize_vars': memory.c:623: warning: suggest parentheses around assignment used as truth value memory.c: In function `px_resize_vars': memory.c:640: warning: suggest parentheses around assignment used as truth value memory.c: In function `v_free_vars': memory.c:671: warning: suggest parentheses around assignment used as truth value memory.c: In function `iv_free_vars': memory.c:691: warning: suggest parentheses around assignment used as truth value memory.c: In function `px_free_vars': memory.c:711: warning: suggest parentheses around assignment used as truth value memory.c: In function `m_free_vars': memory.c:730: warning: suggest parentheses around assignment used as truth value memory.c: At top level: memory.c:32: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c memstat.c -o memstat.o memstat.c: In function `mem_stat_reg_vars': memstat.c:340: warning: suggest parentheses around assignment used as truth value memstat.c: At top level: memstat.c:42: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c msim.c -o msim.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c norm.c -o norm.o norm.c:30: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c nsearch.c -o nsearch.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c otherio.c -o otherio.o otherio.c:31: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c parse.c -o parse.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c plot.c -o plot.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c polygon.c -o polygon.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c pqueue.c -o pqueue.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c predict.c -o predict.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c pxop.c -o pxop.o pxop.c:33: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c qrfactor.c -o qrfactor.o qrfactor.c: In function `QRfactor': qrfactor.c:79: warning: dereferencing type-punned pointer will break strict-aliasing rules qrfactor.c: In function `QRCPfactor': qrfactor.c:119: warning: dereferencing type-punned pointer will break strict-aliasing rules qrfactor.c:120: warning: dereferencing type-punned pointer will break strict-aliasing rules qrfactor.c:121: warning: dereferencing type-punned pointer will break strict-aliasing rules qrfactor.c: In function `makeQ': qrfactor.c:244: warning: dereferencing type-punned pointer will break strict-aliasing rules qrfactor.c:245: warning: dereferencing type-punned pointer will break strict-aliasing rules qrfactor.c: In function `QRsolve': qrfactor.c:307: warning: dereferencing type-punned pointer will break strict-aliasing rules qrfactor.c: In function `QRCPsolve': qrfactor.c:334: warning: dereferencing type-punned pointer will break strict-aliasing rules qrfactor.c: In function `QRcondest': qrfactor.c:464: warning: dereferencing type-punned pointer will break strict-aliasing rules qrfactor.c: At top level: qrfactor.c:41: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c random.c -o random.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c read.c -o read.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c reml.c -o reml.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c report.c -o report.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c s.c -o s.o s.c: In function `gstat_predict': s.c:451: warning: implicit declaration of function `R_FlushConsole' s.c:452: warning: implicit declaration of function `R_ProcessEvents' gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c select.c -o select.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c sem.c -o sem.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c sim.c -o sim.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c solve.c -o solve.o solve.c:32: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c sparse.c -o sparse.o sparse.c: In function `sp_add': sparse.c:489: warning: dereferencing type-punned pointer will break strict-aliasing rules sparse.c: In function `sp_sub': sparse.c:536: warning: dereferencing type-punned pointer will break strict-aliasing rules sparse.c: In function `sp_mltadd': sparse.c:584: warning: dereferencing type-punned pointer will break strict-aliasing rules sparse.c: In function `sp_copy2': sparse.c:668: warning: dereferencing type-punned pointer will break strict-aliasing rules sparse.c: In function `sp_get_vars': sparse.c:867: warning: suggest parentheses around assignment used as truth value sparse.c: In function `sp_resize_vars': sparse.c:897: warning: suggest parentheses around assignment used as truth value sparse.c: In function `sp_free_vars': sparse.c:926: warning: suggest parentheses around assignment used as truth value sparse.c: At top level: sparse.c:37: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c sparseio.c -o sparseio.o sparseio.c:35: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c spbkp.c -o spbkp.o spbkp.c: In function `spBKPfactor': spbkp.c:599: warning: dereferencing type-punned pointer will break strict-aliasing rules spbkp.c:600: warning: dereferencing type-punned pointer will break strict-aliasing rules spbkp.c:608: warning: dereferencing type-punned pointer will break strict-aliasing rules spbkp.c:609: warning: dereferencing type-punned pointer will break strict-aliasing rules spbkp.c:610: warning: dereferencing type-punned pointer will break strict-aliasing rules spbkp.c:611: warning: dereferencing type-punned pointer will break strict-aliasing rules spbkp.c:612: warning: dereferencing type-punned pointer will break strict-aliasing rules spbkp.c:613: warning: dereferencing type-punned pointer will break strict-aliasing rules spbkp.c:566: warning: `onebyone' might be used uninitialized in this function spbkp.c:569: warning: `best_deg' might be used uninitialized in this function spbkp.c: In function `spBKPsolve': spbkp.c:1273: warning: dereferencing type-punned pointer will break strict-aliasing rules spbkp.c: At top level: spbkp.c:34: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c spchfctr.c -o spchfctr.o spchfctr.c:33: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c splufctr.c -o splufctr.o splufctr.c: In function `spLUfactor': splufctr.c:67: warning: dereferencing type-punned pointer will break strict-aliasing rules splufctr.c:77: warning: dereferencing type-punned pointer will break strict-aliasing rules splufctr.c: In function `spLUTsolve': splufctr.c:234: warning: dereferencing type-punned pointer will break strict-aliasing rules gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c sprow.c -o sprow.o sprow.c:37: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c spswap.c -o spswap.o spswap.c: In function `chase_col': spswap.c:139: warning: `e' might be used uninitialized in this function spswap.c: At top level: spswap.c:33: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c stat.c -o stat.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c submat.c -o submat.o submat.c:32: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c userio.c -o userio.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c utils.c -o utils.o utils.c: In function `grass': utils.c:874: warning: suggest parentheses around && within || utils.c:867: warning: unused variable `gisrc' utils.c: At top level: utils.c:755: warning: `what_is_file' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c vario.c -o vario.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c vario_fn.c -o vario_fn.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c vario_io.c -o vario_io.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c vecop.c -o vecop.o vecop.c: In function `v_linlist': vecop.c:280: warning: suggest parentheses around assignment used as truth value vecop.c: At top level: vecop.c:32: warning: `rcsid' defined but not used gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c version.c -o version.o version.c:69:1: warning: "/*" within comment version.c:70:1: warning: "/*" within comment version.c:71:1: warning: "/*" within comment version.c:72:1: warning: "/*" within comment gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c writecmd.c -o writecmd.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c xvalid.c -o xvalid.o ar cr gstat.a *.o ranlib gstat.a windres --include-dir d:/Rcompile/recent/R-1.8.1/src/include -i gstat_res.rc -o gstat_res.o gcc --shared -s -o gstat.dll gstat.def gstat.a gstat_res.o -Ld:/Rcompile/recent/R-1.8.1/src/gnuwin32 -lg2c -lR ... DLL made installing DLL installing R files installing demos installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'gstat' Formats: text html latex example bpy.colors text html latex example bubble text html latex example fit.lmc text html latex example fit.variogram text html latex example fit.variogram.reml text html latex example get.contr text html latex example gstat-internal text html latex gstat text html latex example image text html latex example krige text html latex example krige.cv text html latex example map.to.lev text html latex mapasp text html latex meuse text html latex example meuse.all text html latex example meuse.grid text html latex example ossfim text html latex example oxford text html latex example plot.gstatVariogram text html latex example plot.pointPairs text html latex example plot.variogramCloud text html latex example point.in.polygon text html latex example predict.gstat text html latex example select.spatial text html latex example show.vgms text html latex example variogram text html latex example variogram.line text html latex example vgm text html latex example zerodist text html latex example >>> Building/Updating help pages for package 'gstat' Formats: chm bpy.colors chm bubble chm fit.lmc chm fit.variogram chm fit.variogram.reml chm get.contr chm gstat-internal chm gstat chm image chm krige chm krige.cv chm map.to.lev chm mapasp chm meuse chm meuse.all chm meuse.grid chm ossfim chm oxford chm plot.gstatVariogram chm plot.pointPairs chm plot.variogramCloud chm point.in.polygon chm predict.gstat chm select.spatial chm show.vgms chm variogram chm variogram.line chm vgm chm zerodist chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\Rcompile\CRANpkg\check\1.8\gstat\chm\gstat.chm Compile time: 0 minutes, 2 seconds 30 Topics 155 Local links 18 Internet links 1 Graphic Created d:\Rcompile\CRANpkg\check\1.8\gstat\chm\gstat.chm, 81,135 bytes Compression decreased file by 61,093 bytes. adding MD5 sums installing R.css in d:/Rcompile/CRANpkg/check/1.8/gstat.Rcheck * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking package dependencies ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking for replacement functions with final arg not named 'value' ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C sources/headers ... OK * creating gstat-Ex.R ... OK * checking examples ... OK * checking tests ... make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/check/1.8/gstat.Rcheck/tests' Running 'blockkr.R' Comparing 'blockkr.Rout' to 'blockkr.Rout.save' ...OK Running 'cv.R' Comparing 'cv.Rout' to 'cv.Rout.save' ...OK Running 'cv3d.R' Comparing 'cv3d.Rout' to 'cv3d.Rout.save' ...OK Running 'merge.R' Comparing 'merge.Rout' to 'merge.Rout.save' ...139c139 < 2.10985743e-016 0.5 4 --- > 2.10985743e-16 0.5 4 200,203c200,203 < row 0: 0.5 4.16333634e-017 < row 1: 0.5 -1.38777878e-017 < row 2: -5.55111512e-017 0.5 < row 3: 2.77555756e-017 0.5 --- > row 0: 0.5 4.16333634e-17 > row 1: 0.5 -1.38777878e-17 > row 2: -5.55111512e-17 0.5 > row 3: 2.77555756e-17 0.5 OK Running 'na.action.R' Comparing 'na.action.Rout' to 'na.action.Rout.save' ...OK Running 'variogram.R' Comparing 'variogram.Rout' to 'variogram.Rout.save' ...OK make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/check/1.8/gstat.Rcheck/tests' OK * creating gstat-manual.tex ... OK * checking gstat-manual.tex ... OK