* checking for working latex ... OK * using log directory 'd:/Rcompile/CRANpkg/check/1.8/haplo.stats.Rcheck' * checking for file 'haplo.stats/DESCRIPTION' ... OK * checking if this is a source package ... OK ---------- Making package haplo.stats ------------ adding build stamp to DESCRIPTION making DLL ... making groupsum.d from groupsum.c making haplo_em_pin.d from haplo_em_pin.c making louis_info.d from louis_info.c gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c groupsum.c -o groupsum.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c haplo_em_pin.c -o haplo_em_pin.o haplo_em_pin.c: In function `haplo_em_pin': haplo_em_pin.c:120: warning: int format, long int arg (arg 2) haplo_em_pin.c:193: warning: int format, long int arg (arg 2) haplo_em_pin.c:207: warning: int format, long int arg (arg 2) haplo_em_pin.c:209: warning: int format, long int arg (arg 2) haplo_em_pin.c:233: warning: int format, long int arg (arg 2) haplo_em_pin.c:249: warning: too many arguments for format haplo_em_pin.c:273: warning: int format, long int arg (arg 2) haplo_em_pin.c:273: warning: int format, long int arg (arg 3) haplo_em_pin.c:295: warning: int format, long int arg (arg 3) haplo_em_pin.c:295: warning: int format, long int arg (arg 4) haplo_em_pin.c:302: warning: too many arguments for format haplo_em_pin.c:313: warning: int format, long int arg (arg 3) haplo_em_pin.c:100: warning: `n_trim' might be used uninitialized in this function haplo_em_pin.c:102: warning: `lnlike_old' might be used uninitialized in this function haplo_em_pin.c: In function `write_hap_list': haplo_em_pin.c:433: warning: int format, long int arg (arg 6) haplo_em_pin.c: In function `write_unique_hap_list': haplo_em_pin.c:457: warning: int format, long int arg (arg 3) haplo_em_pin.c: At top level: haplo_em_pin.h:101: warning: `compact' declared `static' but never defined gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c louis_info.c -o louis_info.o ar cr haplo.stats.a *.o ranlib haplo.stats.a windres --include-dir d:/Rcompile/recent/R-1.8.1/src/include -i haplo.stats_res.rc -o haplo.stats_res.o gcc --shared -s -o haplo.stats.dll haplo.stats.def haplo.stats.a haplo.stats_res.o -Ld:/Rcompile/recent/R-1.8.1/src/gnuwin32 -lg2c -lR ... DLL made installing DLL installing R files installing demos installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'haplo.stats' Formats: text html latex example Ginv text html latex example allele.recode text html latex example dglm.fit text html latex example geno.count.pairs text html latex example geno.recode text html latex example glm.fit.nowarn text html latex example haplo.em text html latex example haplo.em.control text html latex example haplo.em.fitter text html latex example haplo.enum text html latex example haplo.glm text html latex example haplo.glm.control text html latex example haplo.group text html latex example haplo.hash text html latex example haplo.model.frame text html latex example haplo.score text html latex example haplo.score.glm text html latex example haplo.score.merge text html latex example haplo.score.podds text html latex example haplo.score.slide text html latex example hla.demo text html latex locator.haplo text html latex example loci text html latex example locus text html latex example louis.info text html latex example mf.gindx text html latex example na.geno.keep text html latex example plot.haplo.score text html latex example plot.haplo.score.slide text html latex example print.haplo.em text html latex example print.haplo.glm text html latex example print.haplo.group text html latex example print.haplo.score text html latex example print.haplo.score.merge text html latex example print.haplo.score.slide text html latex example printBanner text html latex example residScaledGlmFit text html latex example score.sim.control text html latex example setupData text html latex example setupGeno text html latex example summary.haplo.em text html latex example summaryGeno text html latex example varfunc.glm.fit text html latex example >>> Building/Updating help pages for package 'haplo.stats' Formats: chm Ginv chm allele.recode chm dglm.fit chm geno.count.pairs chm geno.recode chm glm.fit.nowarn chm haplo.em chm haplo.em.control chm haplo.em.fitter chm haplo.enum chm haplo.glm chm haplo.glm.control chm haplo.group chm haplo.hash chm haplo.model.frame chm haplo.score chm haplo.score.glm chm haplo.score.merge chm haplo.score.podds chm haplo.score.slide chm hla.demo chm locator.haplo chm loci chm locus chm louis.info chm mf.gindx chm na.geno.keep chm plot.haplo.score chm plot.haplo.score.slide chm print.haplo.em chm print.haplo.glm chm print.haplo.group chm print.haplo.score chm print.haplo.score.merge chm print.haplo.score.slide chm printBanner chm residScaledGlmFit chm score.sim.control chm setupData chm setupGeno chm summary.haplo.em chm summaryGeno chm varfunc.glm.fit chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\Rcompile\CRANpkg\check\1.8\haplo.stats\chm\haplo.stats.chm Compile time: 0 minutes, 2 seconds 44 Topics 106 Local links 0 Internet links 1 Graphic Created d:\Rcompile\CRANpkg\check\1.8\haplo.stats\chm\haplo.stats.chm, 83,525 bytes Compression decreased file by 80,420 bytes. adding MD5 sums installing R.css in d:/Rcompile/CRANpkg/check/1.8/haplo.stats.Rcheck * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking package dependencies ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking for replacement functions with final arg not named 'value' ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C sources/headers ... OK * creating haplo.stats-Ex.R ... OK * checking examples ... OK * creating haplo.stats-manual.tex ... OK * checking haplo.stats-manual.tex ... OK