Entry: EM
Aliases: EM
Keywords: methods
Description: EM algorithm to fit maximum likelihood estimates of trait associations with SNP haplotypes
URL: ../../../library/hapassoc/html/EM.html

Entry: hapassoc-internal
Aliases: EMnull EMvar IPhi IPhiGamma IPhiGaussian SPhi SPhiGamma SPhiGaussian codeHaploDM getHaplos getPhenos handleMissings isHetero isIn isMissing isMultiHetero makeHaploLab makeHaploLabN mlPhi mlPhiGamma momentPhiGamma pYgivenX RecodeHaplos
Keywords: internal
Description: Internal hapassoc functions
URL: ../../../library/hapassoc/html/hapassoc-internal.html

Entry: hypoDat
Aliases: hypoDat
Keywords: datasets
Description: Simulated data for a hypothetical binary trait
URL: ../../../library/hapassoc/html/hypoDat.html

Entry: PreEM
Aliases: PreEM
Keywords: methods
Description: Pre-process the data before fitting it with EM
URL: ../../../library/hapassoc/html/PreEM.html

Entry: summary.EM
Aliases: summary.EM
Keywords: methods
Description: Summarize results of the EM function
URL: ../../../library/hapassoc/html/summaryEM.html
