$,groupedData-method	groupedData-class
$<-,groupedData-method	groupedData-class
Alfalfa	Alfalfa
anova,lme-method	lme-class
Assay	Assay
bdf	bdf
BIC	BIC
BIC,logLik-method	BIC
BodyWeight	BodyWeight
Cefamandole	Cefamandole
coef,lme-method	lme-class
coef,lmeLevel-method	lmeLevel-class
coef,lmList-method	lmList-class
coef,pdMat-method	pdMat-class
coef,reStruct-method	reStruct-class
coef<-	coefGets
coef<-,lmeLevel,numeric-method	coefGets
coef<-,pdCompSymm,numeric-method	coefGets
coef<-,pdDiag,numeric-method	coefGets
coef<-,pdIdent,numeric-method	coefGets
coef<-,pdLogChol,numeric-method	coefGets
coef<-,pdNatural,numeric-method	coefGets
coef<-,reStruct,numeric-method	coefGets
coef<--methods	coefGets
coerce,groupedData,data.frame	coerce-methods
coerce,groupedData,data.frame-method	groupedData-class
coerce,lme,reStruct-method	coerce-methods
coerce,matrix,pdmatrix-method	coerce-methods
coerce,pdCompSymm,pdmatrix-method	coerce-methods
coerce,pdDiag,pdmatrix-method	coerce-methods
coerce,pdfactor,pdmatrix-method	coerce-methods
coerce,pdIdent,corrmatrix-method	coerce-methods
coerce,pdIdent,pdmatrix-method	coerce-methods
coerce,pdLogChol,pdmatrix-method	coerce-methods
coerce,pdMat,corrmatrix-method	coerce-methods
coerce,pdMat,matrix-method	coerce-methods
coerce,pdMat,pdfactor-method	pdMat-class
coerce,pdmatrix,corrmatrix-method	coerce-methods
coerce,pdmatrix,pdfactor-method	coerce-methods
coerce,pdNatural,corrmatrix-method	coerce-methods
coerce,pdNatural,pdmatrix-method	coerce-methods
coerce-methods	coerce-methods
coerce<-,lme,reStruct-method	coerce-methods
coerce<-,pdDiag,pdmatrix-method	coerce-methods
coerce<-,pdIdent,pdmatrix-method	coerce-methods
coerce<-,pdLogChol,pdmatrix-method	coerce-methods
coerce<-,pdMat,matrix-method	coerce-methods
coerce<-,pdMat,pdfactor-method	coerce-methods
coerce<-,pdmatrix,pdfactor-method	coerce-methods
coerce<-,pdNatural,corrmatrix-method	coerce-methods
coerce<-,pdNatural,pdmatrix-method	coerce-methods
convertFromS3groupedData	groupedData
corFactor	corFactor
corMatrix	corMatrix
corMatrix,pdMat-method	corMatrix
corrmatrix-class	corrmatrix-class
Dialyzer	Dialyzer
dim,pdMat-method	pdMat-class
Earthquake	Earthquake
EMsteps<-	EMstepsGets
EMsteps<-,reStruct,list-method	EMstepsGets
EMupdate<-	EMupdateGets
EMupdate<-,lmeLevel,missing,matrix-method	EMupdateGets
EMupdate<-,pdDiag,numeric,matrix-method	EMupdateGets
EMupdate<-,pdIdent,numeric,matrix-method	EMupdateGets
EMupdate<-,pdLogChol,numeric,matrix-method	EMupdateGets
EMupdate<--methods	EMupdateGets
ergoStool	ergoStool
family-class	family-class
Fatigue	Fatigue
fitted,lme-method	lme-class
fitted,reStruct-method	reStruct-class
fixed.effects	fixed.effects
fixef	fixed.effects
fixef,ANY-method	fixed.effects
fixef,lme-method	lme-class
fixef,reStruct-method	fixed.effects
fixef<-	fixed.effects
fixef<-,glmm,numeric-method	glmm-class
fixef<-,reStruct,numeric-method	reStruct-class
formula,groupedData-method	groupedData-class
formula,lme-method	lme-class
formula,lmList-method	lmList-class
formula,pdMat-method	pdMat-class
Gasoline	Gasoline
getCovariate	formulas
getCovariateFormula	formulas
getFixDF	nlme-internal
getFixDF,reStruct-method	reStruct-class
getGroups	formulas
getGroups,data.frame,formula,ANY,ANY,ANY-method	formulas
getGroups,reStruct,missing,ANY,missing,missing-method	reStruct-class
getGroupsFormula	formulas
getGroupsFormula,ANY-method	formulas
getResponse	formulas
getResponse,glmm-method	glmm-class
getResponse,lme-method	lme-class
getResponse,reStruct-method	reStruct-class
getResponseFormula	formulas
GLMM	GLMM
GLMM,ANY,ANY,missing,ANY-method	GLMM
GLMM,formula,ANY,ANY,formula-method	GLMM
GLMM,formula,ANY,ANY,list-method	GLMM
GLMM,formula,ANY,groupedData,missing-method	GLMM
GLMM,missing,ANY,groupedData,ANY-method	GLMM
glmm-class	glmm-class
glmmLa2LogLikComp	nlme-internal
glmmLa2RespWt	nlme-internal
glmmLa2Wt2	nlme-internal
glmmStruct	glmmStruct
glmmStruct,formula,list-method	glmmStruct
Glucose	Glucose
Glucose2	Glucose2
groupedData	groupedData
groupedData-class	groupedData-class
guImmun	guImmun
Gun	Gun
guPrenat	guPrenat
Hsb82	Hsb82
IGF	IGF
intervals	intervals
intervals,lme-method	lme-class
intervals,lmList-method	lmList-class
isInitialized	isInitialized
isInitialized,lmeLevelList-method	isInitialized
isInitialized,pdBlocked-method	isInitialized
isInitialized,pdCompSymm-method	isInitialized
isInitialized,pdMat-method	isInitialized
isInitialized,pdNatural-method	isInitialized
isInitialized-methods	isInitialized
lme	lme
lme,ANY,missing,ANY-method	lme
lme,formula,ANY,formula-method	lme
lme,formula,ANY,list-method	lme
lme,formula,data.frame,list-method	lme
lme,formula,groupedData,missing-method	lme
lme,missing,groupedData,ANY-method	lme
lme-class	lme-class
lmeControl	lmeControl
LMEgradient	LMEgradient
LMEgradient,lmeLevel,matrix,missing-method	LMEgradient
LMEgradient,lmeLevel,missing,missing-method	LMEgradient
LMEgradient,pdDiag,matrix,numeric-method	LMEgradient
LMEgradient,pdIdent,matrix,numeric-method	LMEgradient
LMEgradient,pdLogChol,matrix,numeric-method	LMEgradient
LMEgradient,pdNatural,matrix,numeric-method	LMEgradient
LMEgradient,reStruct,missing,missing-method	reStruct-class
LMEgradient-methods	LMEgradient
LMEhessian	LMEgradient
LMEhessian,lmeLevel,missing,missing,missing-method	LMEgradient
LMEhessian,pdDiag,matrix,array,numeric-method	LMEgradient
LMEhessian,pdLogChol,matrix,array,numeric-method	LMEgradient
LMEhessian,reStruct,missing,missing,missing-method	LMEgradient
LMEhessian-methods	LMEgradient
lmeLevel	lmeLevel
lmeLevel,missing,missing,integer,matrix-method	lmeLevel
lmeLevel,pdMat,factor,integer,matrix-method	lmeLevel
lmeLevel-class	lmeLevel-class
lmeLevelList-class	nlmeInternal-class
LMEoptimize<-	LMEoptimizeGets
LMEoptimize<-,glmm,list-method	LMEoptimizeGets
LMEoptimize<-,reStruct,list-method	LMEoptimizeGets
lmList	lmList
lmList,formula,data.frame-method	lmList
lmList,formula,groupedData-method	groupedData-class
lmList,missing,groupedData-method	groupedData-class
lmList-class	lmList-class
logDet	logDet
logDet,pdBlocked,missing-method	logDet
logDet,pdCompSymm,missing-method	logDet
logDet,pdDiag,missing-method	logDet
logDet,pdIdent,missing-method	logDet
logDet,pdLogChol,missing-method	logDet
logDet,pdMat-method	logDet
logDet,pdNatural,missing-method	logDet
logDet-methods	logDet
logLik,glmm-method	glmm-class
logLik,lme-method	lme-class
logLik,reStruct-method	reStruct-class
Machines	Machines
MathAchieve	MathAchieve
MathAchSchool	MathAchSchool
matrix<-	matrixGets
matrix<-,pdMat,matrix-method	matrixGets
matrix<--methods	matrixGets
Meat	Meat
Milk	Milk
model.matrix,reStruct-method	reStruct-class
model.matrix<-	model.matrixGets
model.matrix<-,reStruct,matrix-method	model.matrixGets
model.matrix<-,reStruct-method	reStruct-class
Muscle	Muscle
Names	Names
Names,ANY-method	Names
names,pdMat-method	pdMat-class
Names-methods	Names
Names<-	Names
Names<-,ANY-method	Names
names<-,pdMat-method	pdMat-class
Names<--methods	Names
nffGroupedData-class	nffGroupedData-class
nfGroupedData-class	nfGroupedData-class
nfnGroupedData-class	nfnGroupedData-class
Nitrendipene	Nitrendipene
nmGroupedData-class	nmGroupedData-class
Oats	Oats
Orthodont	Orthodont
Ovary	Ovary
Oxboys	Oxboys
Oxide	Oxide
PBG	PBG
pdBlocked	pdBlocked-class
pdBlocked-class	pdBlocked-class
pdCompSymm	pdCompSymm-class
pdCompSymm,formula,missing,missing,missing-method	pdCompSymm-class
pdCompSymm-class	pdCompSymm-class
pdDiag	pdDiag-class
pdDiag,formula,missing,missing,missing-method	pdDiag-class
pdDiag-class	pdDiag-class
pdFactor	pdFactor
pdFactor,pdMat-method	pdFactor
pdfactor-class	pdfactor-class
pdFactor-methods	pdFactor
pdgradient	pdgradient
pdgradient,pdIdent-method	pdgradient
pdgradient,pdLogChol-method	pdgradient
pdgradient,pdMat-method	pdgradient
pdgradient-methods	pdgradient
pdgradNumeric	pdgradNumeric
pdIdent	pdIdent-class
pdIdent,formula,missing,missing,missing-method	pdIdent-class
pdIdent-class	pdIdent-class
pdLogChol	pdLogChol-class
pdLogChol,formula,missing,missing,missing-method	pdLogChol-class
pdLogChol-class	pdLogChol-class
pdMat-class	pdMat-class
pdMatrix	pdMatrix
pdMatrix,pdMat-method	pdMatrix
pdmatrix-class	pdmatrix-class
pdMatrix-methods	pdMatrix
pdNatural	pdNatural-class
pdNatural,formula,missing,missing,missing-method	pdNatural-class
pdNatural,pdMat,missing,missing,missing-method	pdNatural-class
pdNatural-class	pdNatural-class
Phenobarb	Phenobarb
Pixel	Pixel
plot,groupedData,missing-method	groupedData-class
plot,lme-method	lme-class
plot,lmList-method	lmList-class
pooledSD	pooledSD
pooledSD,lmList-method	lmList-class
Quinidine	Quinidine
Rail	Rail
random.effects	random.effects
ranef	random.effects
ranef,ANY-method	random.effects
ranef,lme-method	lme-class
ranef,reStruct-method	random.effects
ranef-methods	random.effects
RatPupWeight	RatPupWeight
Relaxin	Relaxin
Remifentanil	Remifentanil
residuals,lme-method	lme-class
response<-	responseGets
response<-,reStruct,matrix-method	responseGets
response<-,reStruct,numeric-method	reStruct-class
reStruct	reStruct
reStruct,formula,list,data.frame,missing,logical-method	reStruct
reStruct,formula,list,data.frame,numeric,logical-method	reStruct
reStruct-class	reStruct-class
s3bbx	s3bbx
s3bby	s3bby
show,glmm-method	glmm-class
show,groupedData-method	groupedData-class
show,lme-method	lme-class
show,lmList-method	lmList-class
show,pdMat-method	pdMat-class
show,summary.glmm-method	nlmeInternal-class
show,summary.lme-method	nlmeInternal-class
show,summary.reStruct-method	summary.reStruct-class
show,VarCorr-method	VarCorr-class
solve,pdBlocked,missing-method	solve-methods
solve,pdDiag,missing-method	solve-methods
solve,pdIdent,missing-method	solve-methods
solve,pdLogChol,missing-method	solve-methods
solve,pdMat,missing-method	solve-methods
solve,pdMat-method	pdMat-class
solve,pdNatural,missing-method	solve-methods
solve-methods	solve-methods
Soybean	Soybean
splitFormula	formulas
Spruce	Spruce
subFormula	formulas
summary,glmm-method	glmm-class
summary,groupedData-method	groupedData-class
summary,lme-method	lme-class
summary,pdMat-method	pdMat-class
summary,reStruct-method	reStruct-class
summary.glmm-class	nlmeInternal-class
summary.lme-class	nlmeInternal-class
summary.pdMat-class	nlmeInternal-class
summary.reStruct-class	summary.reStruct-class
Tetracycline1	Tetracycline1
Tetracycline2	Tetracycline2
update,lme-method	lme-class
update,lmList-method	lmList-class
VarCorr	VarCorr
VarCorr,glmm-method	glmm-class
VarCorr,lme-method	lme-class
VarCorr,reStruct-method	reStruct-class
VarCorr-class	VarCorr-class
Wafer	Wafer
weighted<-	weightedGets
weighted<-,reStruct,matrix-method	weightedGets
weighted<-,reStruct,numeric-method	reStruct-class
Wheat	Wheat
Wheat2	Wheat2
[,groupedData,ANY,ANY,logical-method	groupedData-class
[,groupedData,ANY,ANY,missing-method	groupedData-class
[,groupedData,ANY,missing,logical-method	groupedData-class
[,groupedData,ANY,missing,missing-method	groupedData-class
[,groupedData,missing,ANY,logical-method	groupedData-class
[,groupedData,missing,ANY,missing-method	groupedData-class
[<-,groupedData,ANY,ANY-method	groupedData-class
[<-,groupedData,ANY,missing-method	groupedData-class
[<-,groupedData,missing-method	groupedData-class
[[,groupedData,ANY,ANY-method	groupedData-class
[[,groupedData,ANY,missing-method	groupedData-class
