Entry: align.pedigree
Aliases: align.pedigree alignped1 alignped2 alignped3 alignped4
Keywords: array
Description: Generate plotting information for a pedigree
URL: ../../../library/kinship/html/align.pedigree.html

Entry: as.matrix.bdsmatrix
Aliases: as.matrix.bdsmatrix
Keywords: array
Description: a function for bdsmatrix
URL: ../../../library/kinship/html/as.matrix.bdsmatrix.html

Entry: autohint
Aliases: autohint
Keywords: array
Description: Align a pedigree to print well
URL: ../../../library/kinship/html/autohint.html

Entry: bdsBlock
Aliases: bdsBlock
Keywords: array
Description: Block diagonal matrices.
URL: ../../../library/kinship/html/bdsBlock.html

Entry: bdsI
Aliases: bdsI
Keywords: array
Description: Sparse identity matrices
URL: ../../../library/kinship/html/bdsI.html

Entry: bdsmatrix-class
Aliases: bdsmatrix-class %*%,matrix,bdsmatrix-method %*%,numeric,bdsmatrix-method Math2,bdsmatrix-method Math,bdsmatrix-method Ops,bdsmatrix,numeric-method Ops,bdsmatrix,bdsmatrix-method Ops,numeric,bdsmatrix-method [,bdsmatrix-method all,bdsmatrix-method any,bdsmatrix-method coerce,bdsmatrix,matrix-method coerce,bdsmatrix,vector-method diag,bdsmatrix-method diag<-,bdsmatrix-method dim,bdsmatrix-method dimnames,bdsmatrix-method dimnames<-,bdsmatrix-method max,bdsmatrix-method min,bdsmatrix-method prod,bdsmatrix-method range,bdsmatrix-method show,bdsmatrix-method sum,bdsmatrix-method unique,bdsmatrix,missing-method
Keywords: classes
Description: Class "bdsmatrix"
URL: ../../../library/kinship/html/bdsmatrix-class.html

Entry: bdsmatrix
Aliases: bdsmatrix print.bdsmatrix
Keywords: manip
Description: Create a sparse symmetric block diagonal matrix object
URL: ../../../library/kinship/html/bdsmatrix.html

Entry: bdsmatrix.ibd
Aliases: bdsmatrix.ibd
Keywords: array
Description: Create a bdsmatrix from a list
URL: ../../../library/kinship/html/bdsmatrix.ibd.html

Entry: besthint
Aliases: besthint
Keywords: array
Description: Create a hints matrix for a pedigree.
URL: ../../../library/kinship/html/besthint.html

Entry: coxme
Aliases: coxme coxme.fit coxme.varcheck print.coxme
Keywords: survival
Description: Fit a mixed-effects Cox model
URL: ../../../library/kinship/html/coxme.html

Entry: coxme.control
Aliases: coxme.control strata2
Keywords: survival
Description: Control parameters for coxme
URL: ../../../library/kinship/html/coxme.control.html

Entry: familycheck
Aliases: familycheck
Keywords: manip
Description: Error check for a family classification
URL: ../../../library/kinship/html/familycheck.html

Entry: gchol-class
Aliases: gchol-class coerce,gchol,matrix-method diag,gchol-method show,gchol-method
Keywords: classes
Description: Class "gchol"
URL: ../../../library/kinship/html/gchol-class.html

Entry: gchol-methods
Aliases: gchol-methods gchol,matrix-method
Keywords: methods
Description: Methods for Function gchol in Package 'kinship'
URL: ../../../library/kinship/html/gchol-methods.html

Entry: gchol
Aliases: gchol gchol.bdsmatrix
Keywords: array
Description: Generalized Cholesky decompostion
URL: ../../../library/kinship/html/gchol.html

Entry: gchol.bdsmatrix-class
Aliases: gchol.bdsmatrix-class %*%,matrix,gchol.bdsmatrix-method %*%,numeric,gchol.bdsmatrix-method [,gchol.bdsmatrix-method coerce,gchol.bdsmatrix,matrix-method diag,gchol.bdsmatrix-method dim,gchol.bdsmatrix-method show,gchol.bdsmatrix-method
Keywords: classes
Description: Class "gchol.bdsmatrix"
URL: ../../../library/kinship/html/gchol.bdsmatrix-class.html

Entry: kinship
Aliases: kinship kindepth
Keywords: array
Description: Compute a kinship matrix
URL: ../../../library/kinship/html/kinship.html

Entry: kinship.ops
Aliases: %*% %*%.gchol.bdsmatrix %*%.default %*%.bdsmatrix %*%-methods %*%,ANY,ANY-method %*%,bdsmatrix-method %*%,bdsmatrix,numeric-method %*%,gchol.bdsmatrix-method %*%,gchol.bdsmatrix,numeric-method [.pedigree as.matrix.gchol as.matrix.gchol.bdsmatrix as.vector.bdsmatrix bdsmatrix.reconcile is.list.bdsmatrix is.matrix.bdsmatrix is.matrix.gchol.bdsmatrix is.bdsmatrix is.gchol.bdsmatrix is.list.gchol.bdsmatrix
Keywords: algebra
Description: Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix
URL: ../../../library/kinship/html/kinship.ops.html

Entry: list or NULL-class
Aliases: list or NULL-class
Keywords: classes
Description: Class "list or NULL"
URL: ../../../library/kinship/html/listorNULL-class.html

Entry: lmekin
Aliases: lmekin print.lmekin getCovariateFormula2 getCrossedTerms getGroupsFormula2
Keywords: regression
Description: Linear Mixed Effects model using a kinship matrix.
URL: ../../../library/kinship/html/lmekin.html

Entry: makefamid
Aliases: makefamid
Keywords: manip
Description: Identify family groups
URL: ../../../library/kinship/html/makefamid.html

Entry: makekinship
Aliases: makekinship
Keywords: manip
Description: Create a sparse kinship matrix
URL: ../../../library/kinship/html/makekinship.html

Entry: pedigree
Aliases: pedigree
Keywords: dplot
Description: Create pedigree structure
URL: ../../../library/kinship/html/pedigree.html

Entry: plot.pedigree
Aliases: plot.pedigree
Keywords: hplot
Description: plot pedigrees
URL: ../../../library/kinship/html/plot.pedigree.html

Entry: solve.bdsmatrix
Aliases: solve.bdsmatrix
Keywords: algebra
Description: Solve a matrix equation using the generalized Cholesky decompostion
URL: ../../../library/kinship/html/solve.bdsmatrix.html

Entry: solve.gchol
Aliases: solve.gchol
Keywords: algebra
Description: Solve a matrix equation using the generalized Cholesky decompostion
URL: ../../../library/kinship/html/solve.gchol.html

Entry: solve.gchol.bdsmatrix
Aliases: solve.gchol.bdsmatrix
Keywords: algebra
Description: function solve for gchol.bdsmatrix
URL: ../../../library/kinship/html/solve.gchol.bdsmatrix.html
