domain {adehabitat} | R Documentation

## Estimation of the Potential Distribution of a Species

### Description

`domain` uses the DOMAIN algorithm to estimate the potential distribution of a species based on a list of species occurrences and on maps of the area.

### Usage

    domain(kasc, pts, type = c("value", "potential"), thresh = 0.95)

### Arguments

`kasc` | an object of class `kasc`
`pts` | a data frame giving the x and y coordinates of the species occurrences.
`type` | a character string. The `"value"` of the suitability may be returned or the `"potential"` area of distribution
`thresh` | if `value = "potential"`, a threshold value should be supplied for the suitability (by default 0.95)

### Details

This function implements the DOMAIN algorithm described in Carpenter et al. (1993).

### Value

Returns a matrix of class `asc`.

### Warning

`domain` is restricted to maps containing only numerical variables (i.e. no factors).

### Author(s)

Clément Calenge calenge@biomserv.univ-lyon1.fr

### References

Carpenter, G., Gillison, A.N. and Winter, J. (1993) DOMAIN: a flexible modelling procedure for mapping potential distributions of plants and animals. Biodiversity and conservation, 2, 667–680.

### See Also

`as.kasc` for additionnal information on objects of class `kasc`, `import.asc` for information on matrices of class `asc`.

### Examples

    ## Preparation of the data
    data(puechabon)
    kasc <- puechabon$kasc
    kasc$Aspect <- NULL
    pts <- puechabon$locs[puechabon$locs$Name == "Brock", 4:5]

    ## View of the data
    elevation <- getkasc(kasc, "Elevation")
    image(elevation)
    points(pts, col = "red", pch = 16)

    ## Estimation of habitat suitability map
    hsm <- domain(kasc, pts)
    image(hsm, col = grey((1:256)/256))
    contour(hsm, add = TRUE)
    ## Lighter areas are the most preferred areas

    ## Potential distribution
    hsm <- domain(kasc, pts, type = "potential")
    image(elevation, main = "Habitat suitability map")
    image(hsm, add = TRUE, col = "orange")
    points(pts, col = "red", pch = 16)

[Package adehabitat version 1.3 Index]