adegenet-package	adegenet.package
$,genind-method	accessors
$,genpop-method	accessors
$<-,genind-method	accessors
$<-,genpop-method	accessors
.find.sub.clusters	find.clusters
.genlab	auxil
.readExt	auxil
.rmspaces	auxil
.valid.genind	genind
adegenet	adegenet.package
adegenetTutorial	auxil
adegenetWeb	auxil
as,genind,data.frame-method	as-methods
as,genind,genpop-method	as-methods
as,genind,ktab-method	as-methods
as,genind,matrix-method	as-methods
as,genpop,data.frame-method	as-methods
as,genpop,ktab-method	as-methods
as,genpop,matrix-method	as-methods
as,haploGen,graphNEL-method	haploGen
as,seqTrack,graphNEL-method	seqTrack
as-method	as-methods
as.data.frame.genind	as-methods
as.data.frame.genpop	as-methods
as.genind	as.genind
as.genpop	as.genpop
as.genpop.genind	as-methods
as.ktab.genind	as-methods
as.ktab.genpop	as-methods
as.matrix.genind	as-methods
as.matrix.genpop	as-methods
as.POSIXct.haploGen	haploGen
as.seqTrack.haploGen	haploGen
assignplot	dapc
callOrNULL-class	virClasses
charOrNULL-class	virClasses
checkType	auxil
chooseCN	chooseCN
coerce,genind,data.frame-method	as-methods
coerce,genind,genpop-method	as-methods
coerce,genind,ktab-method	as-methods
coerce,genind,matrix-method	as-methods
coerce,genpop,data.frame-method	as-methods
coerce,genpop,ktab-method	as-methods
coerce,genpop,matrix-method	as-methods
coerce,haploGen,graphNEL-method	haploGen
coerce,seqTrack,graphNEL-method	seqTrack
colorplot	colorplot
colorplot.default	colorplot
colorplot.spca	spca
coords.monmonier	coords.monmonier
dapc	dapc
dapc.data.frame	dapc
dapc.genind	dapc
dapc.matrix	dapc
dapcIllus	dapcIllus
df2genind	df2genind
dist,genpop,ANY,ANY,ANY,missing-method	genpop
dist.genpop	dist.genpop
dist.haploPop	haploPop
DNAbin2genind	sequences
eHGDP	eHGDP
factorOrNULL-class	virClasses
find.clusters	find.clusters
find.clusters.data.frame	find.clusters
find.clusters.genind	find.clusters
find.clusters.matrix	find.clusters
fstat	fstat
gen-class	virClasses
genind	as.genind
genind-class	genind
genind-methods	as.genind
genind2df	df2genind
genind2genotype	export
genind2genpop	genind2genpop
genind2hierfstat	export
genpop	as.genpop
genpop-class	genpop
genpop-methods	as.genpop
get.likelihood	seqTrack
get.likelihood.seqTrack	seqTrack
global.rtest	spca.rtests
gstat.randtest	gstat.randtest
H3N2	H3N2
haploGen	haploGen
haploGen-class	haploGen
haploPop	haploPop
haploPopDiv	haploPop
Hs	Hs
HWE.test.genind	HWE
hybridize	hybridize
import2genind	import
indInfo-class	virClasses
intOrNum-class	virClasses
is.genind	as.genind
is.genpop	as.genpop
isPoly	isPoly
isPoly,genind-method	isPoly
isPoly,genpop-method	isPoly
isPoly-methods	isPoly
ktab-class	as-methods
labels.haploGen	haploGen
listOrNULL-class	virClasses
loadingplot	loadingplot
loadingplot.default	loadingplot
local.rtest	spca.rtests
locNames	accessors
locNames,genind-method	accessors
locNames,genpop-method	accessors
makefreq	makefreq
microbov	microbov
monmonier	monmonier
na.replace	na.replace
na.replace,genind-method	na.replace
na.replace,genpop-method	na.replace
na.replace-methods	na.replace
names,genind-method	genind
names,genpop-method	genpop
nancycats	nancycats
nLoc	accessors
nLoc,genind-method	accessors
nLoc,genpop-method	accessors
old2new	old2new
old2new,ANY-method	old2new
old2new,genind-method	old2new
old2new,genpop-method	old2new
old2new-methods	old2new
optimize.monmonier	monmonier
plot.haploPop	haploPop
plot.monmonier	monmonier
plot.spca	spca
plotHaploGen	haploGen
plotSeqTrack	seqTrack
pop	accessors
pop,genind-method	accessors
pop<-	accessors
pop<-,genind-method	accessors
popInfo-class	virClasses
print,genind-method	genind
print.dapc	dapc
print.haploGen	haploGen
print.haploPop	haploPop
print.monmonier	monmonier
print.spca	spca
propShared	propShared
propTyped	propTyped
propTyped,genind-method	propTyped
propTyped,genpop-method	propTyped
propTyped-methods	propTyped
read.fstat	read.fstat
read.genepop	read.genepop
read.genetix	read.genetix
read.structure	read.structure
repool	repool
rupica	rupica
sample.haploGen	haploGen
sample.haploPop	haploPop
scaleGen	scale
scaleGen,genind-method	scale
scaleGen,genpop-method	scale
scaleGen-methods	scale
scatter.dapc	dapc
screeplot.spca	spca
selPopSize	selpopsize
selPopSize,ANY-method	selpopsize
selPopSize,genind-method	selpopsize
selPopSize-methods	selpopsize
seploc	seploc
seploc,ANY-method	seploc
seploc,genind-method	seploc
seploc,genpop-method	seploc
seploc-methods	seploc
seppop	seppop
seppop,ANY-method	seppop
seppop,genind-method	seppop
seppop-methods	seppop
seqTrack	seqTrack
seqTrack-class	seqTrack
seqTrack.default	seqTrack
seqTrack.haploGen	haploGen
seqTrack.matrix	seqTrack
show,genind-method	genind
show,genpop-method	genpop
sim2pop	sim2pop
spca	spca
spcaIllus	spcaIllus
summary,genind-method	genind
summary,genpop-method	genpop
summary.dapc	dapc
summary.haploPop	haploPop
summary.spca	spca
truenames	truenames
truenames,ANY-method	truenames
truenames,genind-method	truenames
truenames,genpop-method	truenames
truenames-methods	truenames
[,genind-method	accessors
[,genpop-method	accessors
[.haploGen	haploGen
