Categorical Bayesian Network Inference


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Documentation for package ‘catnet’ version 1.08.2

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A B C D I N

-- --

catnet-package catnet: Categorical Bayesian Network Inference

-- A --

alarm The ALARM network
alarmnet The ALARM network
alarmseed The ALARM network
as.graph Graph from catNetwork
as.graph,catNetwork-method Graph from catNetwork
as.igraph catNetwork to igraph
as.igraph,catNetwork-method catNetwork to igraph

-- B --

breast Breast cancer data

-- C --

catnet catnet: Categorical Bayesian Network Inference
catNetwork Class "catNetwork"
catNetwork-class Class "catNetwork"
catNetworkDistance Class "catNetworkDistance"
catNetworkDistance-class Class "catNetworkDistance"
catNetworkEvaluate Class "catNetworkEvaluate"
catNetworkEvaluate-class Class "catNetworkEvaluate"
cnCatnetFromEdges catNetwork from Edges
cnCatnetFromEdges,character-method catNetwork from Edges
cnCatnetFromGraph catNetwork from Graph
cnCatnetFromGraph,graph,list,list-method catNetwork from Graph
cnCatnetFromGraph,graph,list,missing-method catNetwork from Graph
cnCatnetFromGraph,graph,missing,missing-method catNetwork from Graph
cnCatnetFromSif catNetwork from Simple Interaction File (SIF)
cnCatnetFromSif,character-method catNetwork from Simple Interaction File (SIF)
cnCluster Clusters in Network
cnCluster,catNetwork-method Clusters in Network
cnCompare Network Comparison
cnCompare,catNetwork,catNetwork-method Network Comparison
cnCompare,catNetwork,catNetworkEvaluate-method Network Comparison
cnCompare,catNetwork,list-method Network Comparison
cnComplexity Network Complexity
cnComplexity,catNetwork,integer-method Network Complexity
cnComplexity,catNetwork-method Network Complexity
cnDiscretize Data Categorization
cnDot Network Description File
cnDot,catNetwork,character-method Network Description File
cnDot,catNetwork,character-method,character-method Network Description File
cnDot,catNetwork-method Network Description File
cnDot,list,character-method Network Description File
cnDot,list,character-method,character-method Network Description File
cnDot,list-method Network Description File
cnDot,matrix,character-method Network Description File
cnDot,matrix,character-method,character-method Network Description File
cnDot,matrix-method Network Description File
cnEdges Network Edges
cnEdges,catNetwork,missing-method Network Edges
cnEdges,catNetwork,vector-method Network Edges
cnEvaluate Network Evaluation from Data
cnEvaluate,catNetwork-method Network Evaluation from Data
cnFind Find Network by Complexity
cnFind,catNetworkEvaluate-method Find Network by Complexity
cnFind,list-method Find Network by Complexity
cnFindAIC Find Network by AIC
cnFindAIC,catNetworkEvaluate-method Find Network by AIC
cnFindAIC,list-method Find Network by AIC
cnFindBIC Find Network by BIC
cnFindBIC,catNetworkEvaluate-method Find Network by BIC
cnFindBIC,list-method Find Network by BIC
cnLoglik Sample Log-likelihood
cnLoglik,catNetwork-method Sample Log-likelihood
cnMatEdges Network Edge Matrix
cnMatEdges,catNetwork-method Network Edge Matrix
cnMatParents Network Parent Matrix
cnMatParents,catNetwork,missing-method Network Parent Matrix
cnMatParents,catNetwork,vector-method Network Parent Matrix
cnNew New catNetwork
cnNodeLoglik Node Log-likelihood
cnNodeLoglik,catNetwork-method Node Log-likelihood
cnNodeMarginalProb Node Marginal Probability
cnNodeMarginalProb,catNetwork-method Node Marginal Probability
cnNodes Netwok Nodes
cnNodes,catNetwork,missing-method Netwok Nodes
cnNodes,catNetwork,vector-method Netwok Nodes
cnNodeSampleLoglik Node Log-likelihood
cnNumNodes Network Size
cnNumNodes,catNetwork-method Network Size
cnOrder Network Node Order
cnOrder,catNetwork-method Network Node Order
cnOrder,list-method Network Node Order
cnParents Network Parent Structure
cnParents,catNetwork,character-method Network Parent Structure
cnParents,catNetwork,missing-method Network Parent Structure
cnParents,catNetwork,vector-method Network Parent Structure
cnParHist Parenthood Histogram
cnParHist,catNetworkEvaluate-method Parenthood Histogram
cnParHist,list-method Parenthood Histogram
cnPearsonTest Goodness of Fit Test
cnPearsonTest,catNetwork-method Goodness of Fit Test
cnPlot Plot Network
cnPlot,catNetwork-method Plot Network
cnPlot,catNetworkEvaluate-method Plot Network
cnPredict Prediction
cnPredict,catNetwork-method Prediction
cnProb Conditional Probability Structure
cnProb,catNetwork,character-method Conditional Probability Structure
cnProb,catNetwork,missing-method Conditional Probability Structure
cnProb,catNetwork,vector-method Conditional Probability Structure
cnRandomCatnet Random Network
cnReorderNodes Reorder Network Nodes
cnReorderNodes,catNetwork,vector-method Reorder Network Nodes
cnSamples Samples from Network
cnSamples,catNetwork-method Samples from Network
cnSearchHist Parent Histogram Matrix
cnSearchOrder Network Search for Given Node Order
cnSearchSA Stochastic Network Search
cnSetProb Set Probability from Data
cnSetProb,catNetwork-method Set Probability from Data
cnSetProb,catSampleNetwork-method Set Probability from Data
cnSubNetwork Sub-Network
cnSubNetwork,catNetwork,vector,logical-method Sub-Network
cnSubNetwork,catNetwork-method Sub-Network
CPDAG Class CPDAG
CPDAG-class Class CPDAG

-- D --

dag2cpdag Complete Network Representation
dag2cpdag,catNetwork-method Complete Network Representation

-- I --

isDAG Check Direct Acyclic Graph (DAG) Condition

-- N --

novartis Novartis multi-tissue data