* using log directory 'd:/Rcompile/CRANpkg/local/2.10/DEMEtics.Rcheck' * using R version 2.10.1 (2009-12-14) * using session charset: ISO8859-1 * checking for file 'DEMEtics/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'DEMEtics' version '0.8.1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'DEMEtics' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Bootstrapping.Chao: no visible binding for global variable 'D.Chao.values' Bootstrapping.Chao: no visible binding for global variable 'HWE' Bootstrapping.D: no visible binding for global variable 'allelefrequency' Bootstrapping.D: no visible binding for global variable 'sample.sizes' Bootstrapping.D: no visible binding for global variable 'D.values' Bootstrapping.D: no visible binding for global variable 'HWE' Bootstrapping.Dest: no visible binding for global variable 'allelefrequency' Bootstrapping.Dest: no visible binding for global variable 'sample.sizes' Bootstrapping.Dest: no visible binding for global variable 'D.values' Bootstrapping.Dest: no visible binding for global variable 'HWE' Bootstrapping.Gst: no visible binding for global variable 'allelefrequency' Bootstrapping.Gst: no visible binding for global variable 'sample.sizes' Bootstrapping.Gst: no visible binding for global variable 'G.values' Bootstrapping.Gst: no visible binding for global variable 'HWE' Bootstrapping.Gst.est: no visible binding for global variable 'allelefrequency' Bootstrapping.Gst.est: no visible binding for global variable 'sample.sizes' Bootstrapping.Gst.est: no visible binding for global variable 'G.values' Bootstrapping.Gst.est: no visible binding for global variable 'HWE' Dest.Chao: no visible binding for global variable 'allelefrequency' Dest.Chao: no visible binding for global variable 'sample.sizes' Dest.Chao: no visible binding for global variable 'List' H.out: no visible binding for global variable 'allelefrequency' H.out: no visible binding for global variable 'sample.sizes' all.pops.D: no visible binding for global variable 'allelefrequency' all.pops.D: no visible binding for global variable 'sample.sizes' all.pops.D: no visible binding for global variable 'D.values' all.pops.D: no visible binding for global variable 'p.value' all.pops.D: no visible binding for global variable 'D.means' all.pops.D: no visible binding for global variable 'confidence.limits' all.pops.D: no visible binding for global variable 'List' all.pops.Dest: no visible binding for global variable 'allelefrequency' all.pops.Dest: no visible binding for global variable 'sample.sizes' all.pops.Dest: no visible binding for global variable 'Dest.loci' all.pops.Dest: no visible binding for global variable 'D.values' all.pops.Dest: no visible binding for global variable 'p.value' all.pops.Dest: no visible binding for global variable 'Dest.means' all.pops.Dest: no visible binding for global variable 'confidence.limits' all.pops.Dest: no visible binding for global variable 'List' all.pops.Dest.Chao: no visible binding for global variable 'Dest.Chao.loci' all.pops.Dest.Chao: no visible binding for global variable 'D.Chao.values' all.pops.Dest.Chao: no visible binding for global variable 'p.value' all.pops.Dest.Chao: no visible binding for global variable 'Dest.Chao.means' all.pops.Dest.Chao: no visible binding for global variable 'confidence.limits' all.pops.Dest.Chao: no visible binding for global variable 'List' all.pops.Gst: no visible binding for global variable 'allelefrequency' all.pops.Gst: no visible binding for global variable 'sample.sizes' all.pops.Gst: no visible binding for global variable 'Gst.loci' all.pops.Gst: no visible binding for global variable 'G.values' all.pops.Gst: no visible binding for global variable 'Gst.means' all.pops.Gst: no visible binding for global variable 'confidence.limits' all.pops.Gst: no visible binding for global variable 'List' all.pops.Gst.est: no visible binding for global variable 'allelefrequency' all.pops.Gst.est: no visible binding for global variable 'sample.sizes' all.pops.Gst.est: no visible binding for global variable 'Gst.est.loci' all.pops.Gst.est: no visible binding for global variable 'G.values' all.pops.Gst.est: no visible binding for global variable 'Gst.est.means' all.pops.Gst.est: no visible binding for global variable 'confidence.limits' all.pops.Gst.est: no visible binding for global variable 'List' allelefreq: no visible binding for global variable 'allele' pair.pops.D: no visible binding for global variable 'allelefrequency' pair.pops.D: no visible binding for global variable 'sample.sizes' pair.pops.D: no visible binding for global variable 'D.values' pair.pops.D: no visible binding for global variable 'confidence.limits' pair.pops.D: no visible binding for global variable 'D.loci' pair.pops.D: no visible binding for global variable 'p.value' pair.pops.D: no visible binding for global variable 'D.means' pair.pops.D: no visible binding for global variable 'Dv.pairwise.adjusted' pair.pops.Dest: no visible binding for global variable 'allelefrequency' pair.pops.Dest: no visible binding for global variable 'sample.sizes' pair.pops.Dest: no visible binding for global variable 'D.values' pair.pops.Dest: no visible binding for global variable 'confidence.limits' pair.pops.Dest: no visible binding for global variable 'Dest.loci' pair.pops.Dest: no visible binding for global variable 'p.value' pair.pops.Dest: no visible binding for global variable 'Dest.means' pair.pops.Dest: no visible binding for global variable 'Dv.pairwise.adjusted' pair.pops.Dest.Chao: no visible binding for global variable 'allelefrequency' pair.pops.Dest.Chao: no visible binding for global variable 'sample.sizes' pair.pops.Dest.Chao: no visible binding for global variable 'D.Chao.values' pair.pops.Dest.Chao: no visible binding for global variable 'confidence.limits' pair.pops.Dest.Chao: no visible binding for global variable 'Dest.Chao.loci' pair.pops.Dest.Chao: no visible binding for global variable 'p.value' pair.pops.Dest.Chao: no visible binding for global variable 'Dest.Chao.means' pair.pops.Dest.Chao: no visible binding for global variable 'Dv.pairwise.adjusted' pair.pops.Gst: no visible binding for global variable 'allelefrequency' pair.pops.Gst: no visible binding for global variable 'sample.sizes' pair.pops.Gst: no visible binding for global variable 'G.values' pair.pops.Gst: no visible binding for global variable 'confidence.limits' pair.pops.Gst: no visible binding for global variable 'Gst.loci' pair.pops.Gst: no visible binding for global variable 'Gst.means' pair.pops.Gst: no visible binding for global variable 'Dv.pairwise.adjusted' pair.pops.Gst.est: no visible binding for global variable 'allelefrequency' pair.pops.Gst.est: no visible binding for global variable 'sample.sizes' pair.pops.Gst.est: no visible binding for global variable 'G.values' pair.pops.Gst.est: no visible binding for global variable 'confidence.limits' pair.pops.Gst.est: no visible binding for global variable 'Gst.est.loci' pair.pops.Gst.est: no visible binding for global variable 'Gst.est.means' pair.pops.Gst.est: no visible binding for global variable 'Dv.pairwise.adjusted' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking examples ... OK * checking PDF version of manual ... OK