Package: rphast
Version: 1.1
Date: 2009-12-14
Title: RPHAST: R interface to PHAST
Author: Melissa Hubisz, Katherine Pollard, and Adam Siepel
Maintainer: Melissa Hubisz <mjhubisz@cornell.edu>
Description: RPHAST is an R interface to the PHAST pacakge
        (Phylogenetic Analyis with Space/Time Models).  It can be used
        for many types of analysis in comparative and evolutionary
        genomics, such as estimating models of evolution from sequence
        data, scoring alignments for conservation or acceleration, and
        predicting elements based on conservation or custom
        phylogenetic hidden Markov models.  It can also perform many
        basic operations on multiple sequence alignments and
        phylogenetic trees.
License: GPL (>= 2)
URL: http://compgen.bscb.cornell.edu/rphast
Copyright: The code in src/pcre is Copyright (c) 1997-2010 University
        of Cambridge.  All other code is Copyright (c) 2002-2010
        University of California, Cornell University.
Suggests: ape, seqLogo
Collate: 'checkArgs.R' 'feat.R' 'hmm.R' 'listOfLists.R' 'msa.R'
        'phastCons.R' 'phyloFit.R' 'phyloP.R' 'plot.R' 'treeModel.R'
        'trees.R'
Packaged: 2010-09-20 18:59:43 UTC; melissa
Repository: CRAN
Date/Publication: 2010-09-21 08:15:27
Built: R 2.10.1; i386-pc-mingw32; 2010-10-07 17:56:17 UTC; windows
