# Testing for monotonic relationship between gene expression and doses in a microarray experiment.

## Documentation for package ‘IsoGene’ version 1.0-18

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.
- Package NEWS.

## Help Pages

IsoGene-package | IsoGene
dopamine | Dose-response microarray example data
exampleData | Dose-response microarray example data
Isoallfdr | Obtaining the delta table in the SAM procedure
IsoBHPlot | Plot of adjusted p-values using BH or BY adjustment
Isofudge | Calculation of the fudge factor for the five SAM test statistics in the SAM procedure
IsoGene | IsoGene
IsoGene1 | The five test statistics calculated for both the increasing and decreasing trends
IsoGenem | The five test statistics calculated for both the increasing and decreasing trends
IsoGenemSAM | The five SAM test statistics calculated for both the increasing and decreasing trends
IsoPlot | IsoPlot
IsopvaluePlot | Plot of p-values from permutations under increasing or decreasing alternatives
Isoqqstat | Implementation of five SAM test statistics in the SAM procedure
Isoqval | Obtaining the list of significant genes using the SAM procedure
IsoRawp | IsoRawp
IsoSAMPlot | Plots produced using the SAM procedure
IsoTestBH | Test of monotonic trends using the five test statistics with BH or BY adjustment
IsoTestSAM | Obtaining the list of significant genes using the SAM procedure