* using log directory 'd:/Rcompile/CRANpkg/local/2.11/CircSpatial.Rcheck' * using R version 2.11.1 Patched (2010-07-29 r52657) * using session charset: ISO8859-1 * checking for file 'CircSpatial/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'CircSpatial' version '1.0-1' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'CircSpatial' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CircDataimage: no visible binding for '<<-' assignment to 'CircDataimageGlobals' CircDataimage : R1.Prime: no visible binding for '<<-' assignment to 'CircDataimageGlobals' CircDataimage : R1.Prime: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : R1.WriteBinColorVectors: no visible binding for '<<-' assignment to 'CircDataimageGlobals' CircDataimage : R1.WriteBinColorVectors: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : R1.WriteContColorVectors: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : R1.WriteContColorVectors: no visible binding for '<<-' assignment to 'CircDataimageGlobals' CircDataimage : R1.Initialize: no visible binding for '<<-' assignment to 'CircDataimageGlobals' CircDataimage : R1.Initialize: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : R1.SubsetColorScale: no visible binding for '<<-' assignment to 'CircDataimageGlobals' CircDataimage : R1.SubsetColorScale: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : R1.PlotImage: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : R1.PlotArrows: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : R1.PlotMask: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : R1.PlotWheel: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : R1.Pan: no visible binding for '<<-' assignment to 'CircDataimageGlobals' CircDataimage : R1.Pan: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : R1.ChangeColorWheel: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : R1.ChangeColorWheel: no visible binding for '<<-' assignment to 'CircDataimageGlobals' CircDataimage : R1.AutoRotateColorWheel: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : R1.AutoRotateColorWheel: no visible binding for '<<-' assignment to 'CircDataimageGlobals' CircDataimage : R1.RotateColorWheel: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : R1.RotateColorWheel: no visible binding for '<<-' assignment to 'CircDataimageGlobals' CircDataimage : R1.ChangeColorGap: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : R1.ChangeColorGap: no visible binding for '<<-' assignment to 'CircDataimageGlobals' CircDataimage : : no visible binding for global variable 'CircDataimageGlobals' CircDataimage : ChangeColor: no visible binding for '<<-' assignment to 'CircDataimageGlobals' CircDataimage : ChangeColor: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : : no visible binding for '<<-' assignment to 'CircDataimageGlobals' CircDataimage : Smooth.function: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : Smooth.function: no visible binding for '<<-' assignment to 'CircDataimageGlobals' CircDataimage : arrow.cb.function: no visible binding for '<<-' assignment to 'CircDataimageGlobals' CircDataimage : arrow.cb.function: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : arrow.function: no visible binding for '<<-' assignment to 'CircDataimageGlobals' CircDataimage : arrow.function: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : mask.cb.function: no visible binding for global variable 'CircDataimageGlobals' CircDataimage : mask.cb.function: no visible binding for '<<-' assignment to 'CircDataimageGlobals' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking data for non-ASCII characters ... OK * checking examples ... ERROR Running examples in 'CircSpatial-Ex.R' failed. The error most likely occurred in: > ### * InterpDirection > > flush(stderr()); flush(stdout()) > > ### Name: InterpDirection > ### Title: Interpolate Circular-Spatial Model > ### Aliases: InterpDirection > ### Keywords: arith spatial > > ### ** Examples > > ## Construct Trend Model of 121 locations > x1<- 1:11; y1 <- 1:11; y1 <- rep(y1, 11); x1 <- rep(x1, each=11) > model.direction1 <- matrix(data=c( + 157, 141, 126, 113, 101, 90, 79, 67, 54, 40, 25, 152, 137, 123, 111, + 100, 90, 80, 69, 57, 44, 30, 147, 133, 120, 109, 99, 90, 81, 71, 60, + 48, 35, 142, 129, 117, 107, 98, 90, 82, 73, 63, 52, 40, 137, 125, 114, + 105, 97, 90, 83, 75, 66, 56, 45, 132, 121, 111, 103, 96, 90, 84, 77, + 69, 60, 50, 127, 117, 108, 101, 95, 90, 85, 79, 72, 64, 55, 122, 113, + 105, 99, 94, 90, 86, 81, 75, 68, 60, 117, 109, 102, 97, 93, 90, 87, + 83, 78, 72, 65, 112, 105, 99, 95, 92, 90, 88, 85, 81, 76, 70, 107, + 101, 96, 93, 91, 90, 89, 87, 84, 80, 75), ncol=11, byrow=TRUE) > model.direction1 <- as.vector(model.direction1)*pi/180 > > ## Compute vM CRF of 121 observations, Rho=sqrt(0.5) so sill about 0.5, > ## from GRF (Range=4, spherical covariance). > set.seed(666) > crf1<- SimulateCRF(CircDistr="vM", Rho=sqrt(0.5), Range=4, + CovModel="spherical", Grid=cbind(x1, y1), OverFit=TRUE) > > # Make sample > sample.direction1 <- model.direction1 + crf1$direction > > ## Fit An Appropriate Model > FitHoriz1 <- lm(cos(sample.direction1) ~ (x1 + y1)) > FitVert1 <- lm(sin(sample.direction1) ~ (x1 + y1)) > fitted.direction1 <- atan2(FitVert1$fitted.values, + FitHoriz1$fitted.values) > > ## Compute Residuals > resids1 <- CircResidual(X=x1, Y=y1, Raw=sample.direction1, + Trend=fitted.direction1, Plot=FALSE) > > ## Fit cosine Models > ## Fit of exponential with range=4 and sill=.56 adequate > CosinePlots(x=resids1$x, y=resids1$y, directions=resids1$direction, + Lag.n.Adj=1, BinWAdj=1, Plot=TRUE, Cloud=FALSE, Model=TRUE, nugget=0, + Range=4.0, sill=0.56, x.legend=.2, y.legend=0.4, xlim=c(0,8), + ylim=c(0,1)) > > ## Krig to residuals using cosine model > x2 <- seq(3,6, by=0.1); n <- length(x2) > y2 <- x2; y2 <- rep(y2, n) > x2 <- rep(x2, each=n); rm(n) > krig2 <- KrigCRF(krig.x=x2, krig.y=y2, resid.x=resids1$x, + resid.y=resids1$y, resid.direction=resids1$direction, Model = + "exponential", Nugget=0.0, Range=4, sill=0.56, Plot=FALSE) Error in match.arg(fctcall) : 'arg' should be one of "Cov", "Variogram", "CovMatrix" Calls: KrigCRF ... cbind -> cbind -> CovarianceFct -> Covariance -> match.arg Execution halted