Simulation of genomic data in applied genetics

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Documentation for package ‘hypred’ version 0.1

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hypred-package hypred: Simulation of genomic data in applied genetics
codeW.genomeSpecific coding of genome specific design matrices for dominance effects
hypred hypred: Simulation of genomic data in applied genetics
hypredCode Create various genomic design matrices
hypredCode-method Create various genomic design matrices
hypredCode_FUN_dom Create various genomic design matrices
hypredDInv Implements the inverse of the Haldane and Kosambi mapping functions
hypredFounder Creates gametes of two founder lines
hypredFounder-method Creates gametes of two founder lines
hypredGenome Define genome parameters
hypredGenome-class Class "hypredGenome"
hypredNewMap Modify the map of a \code{"\linkS4class{hypredGenome}"} object
hypredNewMap-method Modify the map of a \code{"\linkS4class{hypredGenome}"} object
hypredNewQTL Assign new QTLs to a \code{"\linkS4class{hypredGenome}"} object
hypredNewQTL-method Assign new QTLs to a \code{"\linkS4class{hypredGenome}"} object
hypredRecombine Recombine two haploid genomes
hypredRecombine-method Recombine two haploid genomes
hypredSNPdist Find the genetic distance and recombination frequency between two SNP on a chromosome
hypredSNPdist-method Find the genetic distance and recombination frequency between two SNP on a chromosome
hypredTpGenomeSpecific Determine the true genetic performance (genotypic value) of individuals
hypredTpGenomeSpecific-method Determine the true genetic performance (genotypic value) of individuals
hypredTruePerformance Determine the true genetic performance (genotypic value) of individuals
hypredTruePerformance-method Determine the true genetic performance (genotypic value) of individuals
meiosisFUNallChr Recombine two haploid genomes
show-method Methods for Function show in Package 'methods'
summary-method Methods for Function summary in Package "base"