# Detection of structure from multilocus genetic data.

## Documentation for package ‘Geneland’ version 3.3.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

Geneland-package | Simulation and inference for subdivided populations
coordinates | Example of coordinate file
EstimateFreqNA | Estimate frequencies of null alleles.
FormatGenotypes | Formatting file of genotype data.
Fstat | Computes F statistics on a population genetics dataset given as R object
Fstat.output | Computes F statistics on the output of an inference by MCMC simulation
Geneland | Simulation and inference for subdivided populations
Geneland.GUI | Graphical interface for package Geneland
genotypes | Example of coordinate file
gl2gp | Geneland to Genepop conversion
HZ | Estimate parameters of the hybrid zone model by MCMC simulation
MCMC | Markov Chain Monte-Carlo inference of clusters from genotpype data
nullify | Simulates null alleles
PlotDrift | Plot the drift factors
PlotFreq | Plot the trace of allele frequencies in present time population and optionnaly print it.
PlotFreqA | Plots allele frequencies in ancestral population along the MCMC run and optionally prints it
Plotnpop | Plot of number of populations along the MCMC run
Plotntile | Plot of number of tiles along the MCMC run
PlotTessDyn | Plot tessellation along an MCMC run.
PlotTessellation | Maps of posterior probability of membership
PosteriorMode | Map of mode of posterior distribution of population membership
PostProcessChain | Computation for maps of posterior probability of population membership
PostProcessMultChain | Computation for maps of posterior probability of population membership
show.estimate.hz | Show estimate of parameters of the hybrid zone model by MCMC simulation
show.simdata | Graphical display of data simulated by simdata
simdata | Simulation of georeferenced genotypes under an IBD + barrier model
simFmodel | Simulation of multi-locus genetic data from the spatial F-model