* using log directory 'd:/Rcompile/CRANpkg/local/2.12/DOBAD.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'DOBAD/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DOBAD' version '1.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DOBAD' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: BD.EMInference.prodExpecs.Rd:65-67: Dropping empty section \source
prepare_Rd: BD.MCMC.SC.Rd:70-71: Dropping empty section \source
prepare_Rd: BDMC-class.Rd:31: Dropping empty section \note
prepare_Rd: BDMC-class.Rd:30: Dropping empty section \author
prepare_Rd: BDMC-class.Rd:29: Dropping empty section \references
prepare_Rd: BDPOloglikeGradSqr.CTMC_PO_many.Rd:63: Dropping empty section \keyword
prepare_Rd: BDPOloglikeGradSqr.CTMC_PO_many.Rd:64: Dropping empty section \keyword
prepare_Rd: BDPOloglikeGradSqr.CTMC_PO_many.Rd:33-35: Dropping empty section \details
prepare_Rd: BDPOloglikeGradSqr.CTMC_PO_many.Rd:36-42: Dropping empty section \value
prepare_Rd: BDPOloglikeGradSqr.CTMC_PO_many.Rd:49-51: Dropping empty section \note
prepare_Rd: BDPOloglikeGradSqr.CTMC_PO_many.Rd:46-48: Dropping empty section \author
prepare_Rd: BDPOloglikeGradSqr.CTMC_PO_many.Rd:43-45: Dropping empty section \references
prepare_Rd: BDPOloglikeGradSqr.CTMC_PO_many.Rd:55-57: Dropping empty section \seealso
prepare_Rd: BDPOloglikeGradSqr.CTMC_PO_many.Rd:58-60: Dropping empty section \examples
prepare_Rd: BDloglikelihood.PO.Rd:82: Dropping empty section \keyword
prepare_Rd: BDloglikelihood.PO.Rd:83: Dropping empty section \keyword
prepare_Rd: BDloglikelihood.PO.Rd:55-57: Dropping empty section \note
prepare_Rd: BDloglikelihood.PO.Rd:49-51: Dropping empty section \references
prepare_Rd: BDloglikelihood.PO.Rd:61-63: Dropping empty section \seealso
prepare_Rd: BDsummaryStats.Rd:98-100: Dropping empty section \source
prepare_Rd: CTMC-class.Rd:29: Dropping empty section \note
prepare_Rd: CTMC-class.Rd:27: Dropping empty section \references
prepare_Rd: CTMC.simulate.Rd:65: Dropping empty section \keyword
prepare_Rd: CTMC.simulate.Rd:66: Dropping empty section \keyword
prepare_Rd: CTMC.simulate.Rd:39-45: Dropping empty section \value
prepare_Rd: CTMC.simulate.Rd:52-54: Dropping empty section \note
prepare_Rd: CTMC.simulate.Rd:46-48: Dropping empty section \references
prepare_Rd: CTMC.simulate.Rd:57-59: Dropping empty section \seealso
prepare_Rd: CTMC.simulate.Rd:60-62: Dropping empty section \examples
prepare_Rd: CTMC.simulate.piecewise.Rd:56: Dropping empty section \keyword
prepare_Rd: CTMC.simulate.piecewise.Rd:57: Dropping empty section \keyword
prepare_Rd: CTMC.simulate.piecewise.Rd:30-32: Dropping empty section \details
prepare_Rd: CTMC.simulate.piecewise.Rd:42-44: Dropping empty section \note
prepare_Rd: CTMC.simulate.piecewise.Rd:36-38: Dropping empty section \references
prepare_Rd: CTMC.simulate.piecewise.Rd:48-50: Dropping empty section \seealso
prepare_Rd: CTMC.simulate.piecewise.Rd:51-52: Dropping empty section \examples
prepare_Rd: CTMCPO2indepIntervals.Rd:53: Dropping empty section \keyword
prepare_Rd: CTMCPO2indepIntervals.Rd:54: Dropping empty section \keyword
prepare_Rd: CTMCPO2indepIntervals.Rd:23-25: Dropping empty section \details
prepare_Rd: CTMCPO2indepIntervals.Rd:39-41: Dropping empty section \note
prepare_Rd: CTMCPO2indepIntervals.Rd:36-38: Dropping empty section \author
prepare_Rd: CTMCPO2indepIntervals.Rd:33-35: Dropping empty section \references
prepare_Rd: CTMCPO2indepIntervals.Rd:45-47: Dropping empty section \seealso
prepare_Rd: CTMCPO2indepIntervals.Rd:48-50: Dropping empty section \examples
prepare_Rd: CTMC_PO_1-class.Rd:31: Dropping empty section \note
prepare_Rd: CTMC_PO_1-class.Rd:29: Dropping empty section \references
prepare_Rd: CTMC_PO_1-class.Rd:32-33: Dropping empty section \seealso
prepare_Rd: CTMC_PO_many-class.Rd:26: Dropping empty section \note
prepare_Rd: CTMC_PO_many-class.Rd:25: Dropping empty section \author
prepare_Rd: CTMC_PO_many-class.Rd:24: Dropping empty section \references
prepare_Rd: CTMC_PO_many-class.Rd:27-28: Dropping empty section \seealso
prepare_Rd: EM.BD.SC.Rd:94-96: Dropping empty section \source
prepare_Rd: EMutilities.Rd:95-96: Dropping empty section \source
prepare_Rd: Nij.Rd:47: Dropping empty section \keyword
prepare_Rd: Nij.Rd:48: Dropping empty section \keyword
prepare_Rd: Nij.Rd:33-35: Dropping empty section \note
prepare_Rd: Nij.Rd:30-32: Dropping empty section \author
prepare_Rd: Nij.Rd:27-29: Dropping empty section \references
prepare_Rd: Nij.Rd:39-41: Dropping empty section \seealso
prepare_Rd: Nij.Rd:42-44: Dropping empty section \examples
prepare_Rd: Nplus.Rd:31-32: Dropping empty section \details
prepare_Rd: add.joint.mean.many.Rd:237-239: Dropping empty section \source
prepare_Rd: bdARsimCondEnd.Rd:84: Dropping empty section \keyword
prepare_Rd: bdARsimCondEnd.Rd:85: Dropping empty section \keyword
prepare_Rd: bdARsimCondEnd.Rd:69-71: Dropping empty section \note
prepare_Rd: bdARsimCondEnd.Rd:64-65: Dropping empty section \references
prepare_Rd: bdARsimCondEnd.Rd:75-77: Dropping empty section \seealso
prepare_Rd: combineCTMC.Rd:50: Dropping empty section \keyword
prepare_Rd: combineCTMC.Rd:51: Dropping empty section \keyword
prepare_Rd: combineCTMC.Rd:36-38: Dropping empty section \note
prepare_Rd: combineCTMC.Rd:33-35: Dropping empty section \author
prepare_Rd: combineCTMC.Rd:30-32: Dropping empty section \references
prepare_Rd: combineCTMC.Rd:42-44: Dropping empty section \seealso
prepare_Rd: combineCTMC.Rd:45-47: Dropping empty section \examples
prepare_Rd: derivType.Rd:65: Dropping empty section \keyword
prepare_Rd: derivType.Rd:66: Dropping empty section \keyword
prepare_Rd: derivType.Rd:38-44: Dropping empty section \value
prepare_Rd: derivType.Rd:51-53: Dropping empty section \note
prepare_Rd: derivType.Rd:48-50: Dropping empty section \author
prepare_Rd: derivType.Rd:45-47: Dropping empty section \references
prepare_Rd: derivType.Rd:57-59: Dropping empty section \seealso
prepare_Rd: derivType.Rd:60-62: Dropping empty section \examples
prepare_Rd: getBDinform.PO.Rd:51: Dropping empty section \seealso
prepare_Rd: getBDinform.Rd:91: Dropping empty section \seealso
prepare_Rd: getDataSummary.CTMC_PO_many.Rd:53: Dropping empty section \keyword
prepare_Rd: getDataSummary.CTMC_PO_many.Rd:54: Dropping empty section \keyword
prepare_Rd: getDataSummary.CTMC_PO_many.Rd:27-33: Dropping empty section \value
prepare_Rd: getDataSummary.CTMC_PO_many.Rd:40-42: Dropping empty section \note
prepare_Rd: getDataSummary.CTMC_PO_many.Rd:34-36: Dropping empty section \references
prepare_Rd: getDataSummary.CTMC_PO_many.Rd:46-48: Dropping empty section \seealso
prepare_Rd: getDataSummary.CTMC_PO_many.Rd:49-50: Dropping empty section \examples
prepare_Rd: getInitParams.Rd:77: Dropping empty section \keyword
prepare_Rd: getInitParams.Rd:78: Dropping empty section \keyword
prepare_Rd: getInitParams.Rd:47-49: Dropping empty section \details
prepare_Rd: getInitParams.Rd:50-56: Dropping empty section \value
prepare_Rd: getInitParams.Rd:63-65: Dropping empty section \note
prepare_Rd: getInitParams.Rd:60-62: Dropping empty section \author
prepare_Rd: getInitParams.Rd:57-59: Dropping empty section \references
prepare_Rd: getInitParams.Rd:69-71: Dropping empty section \seealso
prepare_Rd: getInitParams.Rd:72-74: Dropping empty section \examples
prepare_Rd: getMCstate.Rd:48: Dropping empty section \keyword
prepare_Rd: getMCstate.Rd:49: Dropping empty section \keyword
prepare_Rd: getMCstate.Rd:21-23: Dropping empty section \details
prepare_Rd: getMCstate.Rd:34-36: Dropping empty section \note
prepare_Rd: getMCstate.Rd:31-33: Dropping empty section \author
prepare_Rd: getMCstate.Rd:28-30: Dropping empty section \references
prepare_Rd: getMCstate.Rd:40-42: Dropping empty section \seealso
prepare_Rd: getMCstate.Rd:43-45: Dropping empty section \examples
prepare_Rd: getNewParams.SC.Rd:71: Dropping empty section \keyword
prepare_Rd: getNewParams.SC.Rd:72: Dropping empty section \keyword
prepare_Rd: getNewParams.SC.Rd:45-47: Dropping empty section \details
prepare_Rd: getNewParams.SC.Rd:57-59: Dropping empty section \note
prepare_Rd: getNewParams.SC.Rd:54-56: Dropping empty section \author
prepare_Rd: getNewParams.SC.Rd:51-53: Dropping empty section \references
prepare_Rd: getNewParams.SC.Rd:63-65: Dropping empty section \seealso
prepare_Rd: getNewParams.SC.Rd:66-68: Dropping empty section \examples
prepare_Rd: getPartialData.Rd:50: Dropping empty section \keyword
prepare_Rd: getPartialData.Rd:51: Dropping empty section \keyword
prepare_Rd: getPartialData.Rd:36-38: Dropping empty section \note
prepare_Rd: getPartialData.Rd:33-35: Dropping empty section \author
prepare_Rd: getPartialData.Rd:30-32: Dropping empty section \references
prepare_Rd: getPartialData.Rd:42-44: Dropping empty section \seealso
prepare_Rd: getPartialData.Rd:45-47: Dropping empty section \examples
prepare_Rd: graph.CTMC.Rd:74: Dropping empty section \keyword
prepare_Rd: graph.CTMC.Rd:75: Dropping empty section \keyword
prepare_Rd: graph.CTMC.Rd:50-52: Dropping empty section \value
prepare_Rd: graph.CTMC.Rd:59-61: Dropping empty section \note
prepare_Rd: graph.CTMC.Rd:56-58: Dropping empty section \author
prepare_Rd: graph.CTMC.Rd:53-55: Dropping empty section \references
prepare_Rd: graph.CTMC.Rd:69-71: Dropping empty section \examples
prepare_Rd: list2CTMC.Rd:45: Dropping empty section \keyword
prepare_Rd: list2CTMC.Rd:46: Dropping empty section \keyword
prepare_Rd: list2CTMC.Rd:19-21: Dropping empty section \details
prepare_Rd: list2CTMC.Rd:31-33: Dropping empty section \note
prepare_Rd: list2CTMC.Rd:28-30: Dropping empty section \author
prepare_Rd: list2CTMC.Rd:25-27: Dropping empty section \references
prepare_Rd: list2CTMC.Rd:37-39: Dropping empty section \seealso
prepare_Rd: list2CTMC.Rd:40-42: Dropping empty section \examples
prepare_Rd: num.deriv.Rd:70: Dropping empty section \keyword
prepare_Rd: num.deriv.Rd:71: Dropping empty section \keyword
prepare_Rd: num.deriv.Rd:56-58: Dropping empty section \note
prepare_Rd: num.deriv.Rd:53-55: Dropping empty section \author
prepare_Rd: num.deriv.Rd:50-52: Dropping empty section \references
prepare_Rd: num.deriv.Rd:62-64: Dropping empty section \seealso
prepare_Rd: num.deriv.Rd:65-67: Dropping empty section \examples
prepare_Rd: power.coef.one.Rd:58: Dropping empty section \keyword
prepare_Rd: power.coef.one.Rd:59: Dropping empty section \keyword
prepare_Rd: power.coef.one.Rd:31-33: Dropping empty section \details
prepare_Rd: power.coef.one.Rd:44-46: Dropping empty section \note
prepare_Rd: power.coef.one.Rd:41-43: Dropping empty section \author
prepare_Rd: power.coef.one.Rd:38-40: Dropping empty section \references
prepare_Rd: power.coef.one.Rd:50-52: Dropping empty section \seealso
prepare_Rd: power.coef.one.Rd:53-55: Dropping empty section \examples
prepare_Rd: process.prob.one.Rd:78: Dropping empty section \keyword
prepare_Rd: process.prob.one.Rd:79: Dropping empty section \keyword
prepare_Rd: process.prob.one.Rd:51-57: Dropping empty section \value
prepare_Rd: process.prob.one.Rd:64-66: Dropping empty section \note
prepare_Rd: process.prob.one.Rd:61-63: Dropping empty section \author
prepare_Rd: process.prob.one.Rd:58-60: Dropping empty section \references
prepare_Rd: process.prob.one.Rd:70-72: Dropping empty section \seealso
prepare_Rd: process.prob.one.Rd:73-75: Dropping empty section \examples
prepare_Rd: sampleJumpTime.Rd:113: Dropping empty section \keyword
prepare_Rd: sampleJumpTime.Rd:114: Dropping empty section \keyword
prepare_Rd: sampleJumpTime.Rd:98-100: Dropping empty section \note
prepare_Rd: sampleJumpTime.Rd:92-94: Dropping empty section \references
prepare_Rd: sampleJumpTime.Rd:108-110: Dropping empty section \examples
prepare_Rd: simplify.Rd:47: Dropping empty section \keyword
prepare_Rd: simplify.Rd:48: Dropping empty section \keyword
prepare_Rd: simplify.Rd:30-32: Dropping empty section \author
prepare_Rd: simplify.Rd:27-29: Dropping empty section \references
prepare_Rd: simplify.Rd:42-44: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking PDF version of manual ... OK