* using log directory 'd:/Rcompile/CRANpkg/local/2.12/GenABEL.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'GenABEL/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GenABEL' version '1.6-9'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenABEL' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
impute2databel: no visible binding for global variable 'SNP'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'GenABEL-Ex.R' failed
The error most likely occurred in:

> ### Name: findRelatives
> ### Title: guesses relations between individuals...
> ### Aliases: findRelatives
> ### Keywords: htest
> 
> ### ** Examples
> data(ge03d2.clean)
> df <- ge03d2.clean[,autosomal(ge03d2.clean)]
> df <- df[,sort(sample(1:nsnps(df),1000))]
> eaf <- summary(gtdata(df))$"Q.2"
> relInfo <- findRelatives(df[27:30,],q=eaf)

  |                                                                            
  |                                                                      |   0%Error in simplify && length(answer) : invalid 'x' type in 'x && y'
Calls: findRelatives -> makeTransitionMatrix -> sapply
Execution halted