* using log directory 'd:/Rcompile/CRANpkg/local/2.12/biGraph.Rcheck' * using R version 2.12.2 (2011-02-25) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'biGraph/DESCRIPTION' ... OK * this is package 'biGraph' version '0.9-3' * checking package dependencies ... NOTE Package suggested but not available for checking: multicore * checking if this is a source package ... OK * checking whether package 'biGraph' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE bipartite.betweenness.centrality: no visible binding for global variable 'type' bipartite.closeness.centrality: no visible binding for global variable 'type' bipartite.projection.informationloss: no visible binding for global variable 'type' covLoss: no visible global function definition for 'mclapply' degree.centrality: no visible binding for global variable 'type' edge.dH: no visible global function definition for 'mclapply' edge.dH: no visible binding for global variable 'H.after' get.Hafter.edge: no visible global function definition for 'nei' get.Hafter.edge: no visible binding for global variable 'id' get.Hafter.vertex: no visible binding for global variable 'id' get.weighted.projection: no visible binding for global variable 'type' graph.dH: no visible global function definition for 'mclapply' lpi: no visible binding for global variable 'type' lpi: no visible binding for global variable 'lp' single.mode.betweenness.centralization: no visible binding for global variable 'type' single.mode.closeness.centralization: no visible binding for global variable 'type' single.mode.degree.centralization: no visible binding for global variable 'type' vertex.avCovLoss: no visible global function definition for 'to' vertex.dH: no visible global function definition for 'mclapply' * checking Rd files ... NOTE prepare_Rd: biGraph-internal.Rd:32-33: Dropping empty section \examples prepare_Rd: bipartite.closeness.centrality.Rd:33-34: Dropping empty section \note prepare_Rd: bipartite.graph.density.Rd:33-34: Dropping empty section \note prepare_Rd: bipartite.projection.informationloss.Rd:64-66: Dropping empty section \note prepare_Rd: degree.centrality.Rd:37-38: Dropping empty section \note prepare_Rd: g.Rd:20-21: Dropping empty section \references prepare_Rd: lpi.Rd:42-44: Dropping empty section \note prepare_Rd: print.lpi.Rd:22-24: Dropping empty section \details prepare_Rd: print.lpi.Rd:25-31: Dropping empty section \value prepare_Rd: print.lpi.Rd:38-40: Dropping empty section \note prepare_Rd: print.lpi.Rd:44-46: Dropping empty section \seealso prepare_Rd: print.summary.lpi.Rd:22-24: Dropping empty section \details prepare_Rd: print.summary.lpi.Rd:25-31: Dropping empty section \value prepare_Rd: print.summary.lpi.Rd:38-40: Dropping empty section \note prepare_Rd: read.lpi.Rd:25-26: Dropping empty section \details prepare_Rd: read.lpi.Rd:38-40: Dropping empty section \note prepare_Rd: single.mode.closeness.centralization.Rd:34-35: Dropping empty section \note prepare_Rd: single.mode.degree.centralization.Rd:33-34: Dropping empty section \note prepare_Rd: summary.lpi.Rd:22-24: Dropping empty section \details prepare_Rd: summary.lpi.Rd:38-40: Dropping empty section \note prepare_Rd: write.lpi.Rd:22-24: Dropping empty section \details prepare_Rd: write.lpi.Rd:25-26: Dropping empty section \value prepare_Rd: write.lpi.Rd:33-35: Dropping empty section \note * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package(s) unavailable to check Rd xrefs: 'multicore' * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking data for non-ASCII characters ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * checking PDF version of manual ... OK