* using log directory 'd:/Rcompile/CRANpkg/local/2.12/h5r.Rcheck' * using R version 2.12.2 (2011-02-25) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'h5r/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'h5r' version '1.2' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'h5r' can be installed ... ERROR Installation failed. The installation logfile: * installing *source* package 'h5r' ... ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs *** arch - i386 make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/local/2.12/h5r/src-i386' gcc -I"d:/Rcompile/recent/R-2.12.2/include" -Id:/Rcompile/CRANpkg/extralibs/hdf5-support/include -D_HDF5USEDLL_ -I"d:/Rcompile/CRANpkg/extralibs/local/include" -O3 -Wall -std=gnu99 -c h5_debug.c -o h5_debug.o gcc -I"d:/Rcompile/recent/R-2.12.2/include" -Id:/Rcompile/CRANpkg/extralibs/hdf5-support/include -D_HDF5USEDLL_ -I"d:/Rcompile/CRANpkg/extralibs/local/include" -O3 -Wall -std=gnu99 -c h5_wrap.c -o h5_wrap.o h5_wrap.c: In function '_h5R_is_vlen': h5_wrap.c:176:11: warning: 'dtype' may be used uninitialized in this function h5_wrap.c: In function '_h5R_read_vlen_str': h5_wrap.c:176:11: warning: 'dtype' may be used uninitialized in this function h5_wrap.c:176:11: note: 'dtype' was declared here gcc -shared -s -static-libgcc -o h5r.dll tmp.def h5_debug.o h5_wrap.o -Ld:/Rcompile/CRANpkg/extralibs/local/lib -Ld:/Rcompile/CRANpkg/extralibs/hdf5-support -lhdf5 -Ld:/Rcompile/recent/R-2.12.2/bin/i386 -lR d:/compiler/mingw32-4.5.0/bin/../lib/gcc/mingw32/4.5.0/../../../../mingw32/bin/ld.exe: cannot find -lhdf5 collect2: ld returned 1 exit status make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/local/2.12/h5r/src-i386' ERROR: compilation failed for package 'h5r' * removing 'd:/Rcompile/CRANpkg/lib/2.12/h5r'