# Linear mixed-effects models using S4 classes

## Documentation for package ‘lme4’ version 0.999375-42

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.
- Package NEWS.

## Help Pages

anova-method | Mixed Model Representations and *mer Methods
as.data.frame-method | Mixed-model Markov chain Monte Carlo results
as.matrix-method | Mixed-model Markov chain Monte Carlo results
cake | Breakage angle of chocolate cakes
cbpp | Contagious bovine pleuropneumonia
cbpp_PB | Stored parametric bootstrap samples for 'cbpp' data
coef-method | Class "lmList"
coef-method | Mixed Model Representations and *mer Methods
coerce-method | Mixed Model Representations and *mer Methods
coerce-method | Mixed-model Markov chain Monte Carlo results
confint-method | Class "lmList"
densityplot-method | Mixed-model Markov chain Monte Carlo results
deviance-method | Mixed Model Representations and *mer Methods
Dyestuff | Yield of dyestuff by batch
Dyestuff2 | Yield of dyestuff by batch
expand-method | Mixed Model Representations and *mer Methods
fitted-method | Mixed Model Representations and *mer Methods
fixed.effects | Extract the fixed-effects estimates
fixef | Extract the fixed-effects estimates
fixef-method | Extract the fixed-effects estimates
formula-method | Class "lmList"
formula-method | Mixed Model Representations and *mer Methods
getME | Extract or Get Generalize Components from a Fitted Mixed Effects Model
glmer | Fit Mixed-Effects Models
HPDinterval | Highest Posterior Density intervals
HPDinterval-method | Highest Posterior Density intervals
lmer | Fit Mixed-Effects Models
lmer2 | Fit Mixed-Effects Models
lmList | List of lm Objects with a Common Model
lmList-class | Class "lmList"
lmList-method | List of lm Objects with a Common Model
logLik-method | Mixed Model Representations and *mer Methods
mcmcsamp | Generate an MCMC sample
mcmcsamp-method | Generate an MCMC sample
mer-class | Mixed Model Representations and *mer Methods
merMCMC-class | Mixed-model Markov chain Monte Carlo results
model.frame-method | Mixed Model Representations and *mer Methods
model.matrix-method | Mixed Model Representations and *mer Methods
nlmer | Fit Mixed-Effects Models
Pastes | Paste strength by batch and cask
Penicillin | Variation in penicillin testing
plot-method | Class "lmList"
print-method | Mixed Model Representations and *mer Methods
qqmath-method | Mixed-model Markov chain Monte Carlo results
ranef | Extract the modes of the random effects
ranef-method | Extract the modes of the random effects
ranef-methods | Extract the modes of the random effects
refit | Re-fit a model to a new response vector
refit-method | Re-fit a model to a new response vector
refit-method | Simulate based on mer fits
resid-method | Mixed Model Representations and *mer Methods
residuals-method | Mixed Model Representations and *mer Methods
show-method | Class "VarCorr"
show-method | Class "lmList"
show-method | Mixed Model Representations and *mer Methods
simulate-mer | Simulate based on mer fits
simulate-method | Simulate based on mer fits
sleepstudy | Reaction times in a sleep deprivation study
sleepstudy_PB | Stored parametric bootstrap samples for the 'sleepstudy' data
summary-method | Mixed Model Representations and *mer Methods
summary.mer-class | Mixed Model Representations and *mer Methods
terms-method | Mixed Model Representations and *mer Methods
update-method | Class "lmList"
update-method | Mixed Model Representations and *mer Methods
VarCorr | Extract variance and correlation components
VarCorr-class | Class "VarCorr"
VarCorr-method | Extract variance and correlation components
vcov-method | Mixed Model Representations and *mer Methods
VerbAgg | Verbal Aggression item responses
with-method | Mixed Model Representations and *mer Methods
xyplot-method | Mixed-model Markov chain Monte Carlo results