carex                   Carex section Ovales tree, chromosome data, and
                        nodes
informationCriterion    Information criterion and weights for a set of
                        models
isMonophyletic          Test whether a set of taxa is monophyletic on
                        an ouch-style tree
multiModel              Test multiple models of character transition at
                        a single node
ouSim                   Discrete-time simulation of Ornstein-Uhlenbeck
                        models on a user tree.
paintBranches           Paint branches for Ornstein-Uhlenbeck analysis
plot.ouSim              Visualizing discrete-time simulation of
                        Ornstein-Uhlenbeck models.
regimeMaker             Paint ouch-style regimes over a set of trees
                        based on a user-defined matrix
regimeMatrix            Create a matrix that defines models for batch
                        analysis
regimeVectors           Paint all possible regimes
runBatchHansen          Analyze Ornstein-Uhlenbeck models over a set of
                        trees
summary.hansenBatch     Summarize output from runBatchHansen
