addSubNode	addSubNode
as	phylo4d_ext-class
as,phylo,phylo4d_ext-method	phylo4d_ext-class
as,phylo4,phylo4d_ext-method	phylo4d_ext-class
as,phylo4d,phylo4d_ext-method	phylo4d_ext-class
as-method	phylo4d_ext-class
coerce,phylo,phylo4d_ext-method	phylo4d_ext-class
coerce,phylo4,phylo4d_ext-method	phylo4d_ext-class
coerce,phylo4d,phylo4d_ext-method	phylo4d_ext-class
coerce-methods	phylo4d_ext-class
collapse.singletons	collapse.singletons
collapse.subnodes	collapse.subnodes
collapse.to.singles	collapse.to.singles
deep.phy.copy	deep.phy.copy
expand.singles	expand.singles
get.nexus.comments	get.nexus.comments
get.nodenames	get.nodenames
get.tree.weights	get.tree.weights
getEmptyDataFrame	getEmptyDataFrame
getSubNodeData	getSubNodeData
getSubNodeEdgeInds	getSubNodeEdgeInds
getSubNodePosish	getSubNodePosish
has.block	has.block
has.characters2	has.characters2
has.weights	has.weights
hasData	hasData
hasData,list-method	hasData
hasData,phylo-method	hasData
hasData,phylo4-method	hasData
hasData,phylo4d-method	hasData
hasData-methods	hasData
hasDataColumn	hasDataColumn
hasDataColumn,phylo,ANY-method	hasDataColumn
hasDataColumn,phylo4,ANY-method	hasDataColumn
hasDataColumn,phylo4d,character-method	hasDataColumn
hasDataColumn,phylo4d,numeric-method	hasDataColumn
hasDataColumn-methods	hasDataColumn
hasSubNodes	hasSubNodes
hasSubNodes,list-method	hasSubNodes
hasSubNodes,phylo-method	hasSubNodes
hasSubNodes,phylo4-method	hasSubNodes
hasSubNodes,phylo4d_ext-method	hasSubNodes
hasSubNodes-methods	hasSubNodes
hasWeight	phylo4d_ext-class
hasWeight,list-method	phylo4d_ext-class
hasWeight,phylo4d_ext-method	phylo4d_ext-class
is.simmap	is.simmap
match.order	match.order
newlabels.v15	newlabels.v15
newlabels.v1x	newlabels.v1x
nSubNodes	nSubNodes
phyext	phyext
phyext,character-method	phyext
phyext,list-method	phyext
phyext,phylo-method	phyext
phyext,phylo4-method	phyext
phyext,phylo4d-method	phyext
phyext,phylo4d_ext-method	phyext
phyext-methods	phyext
phyextPlot	phyextPlot
phylo4d_ext-class	phylo4d_ext-class
plot,phylo4d_ext,missing-method	phylo4d_ext-class
read.characters2	read.characters2
read.nexus.block	read.nexus.block
read.nexus.simmap	read.nexus.simmap
read.simmap	read.simmap
read.simmap.new	read.simmap.new
rmdata	rmdata
rmdata,brownie,character,missing-method	rmdata
rmdata,brownie,numeric,ANY-method	rmdata
rmdata,brownie,numeric,missing-method	rmdata
rmdata,brownie,numeric,numeric-method	rmdata
rmdata,list,ANY,missing-method	rmdata
rmdata,phylo4d,character,missing-method	rmdata
rmdata,phylo4d,numeric,missing-method	rmdata
rmdata,phylo4d_ext,character,missing-method	rmdata
rmdata,phylo4d_ext,numeric,missing-method	rmdata
rmdata,phylo4d_ext,numeric,numeric-method	rmdata
rmdata-methods	rmdata
show,phylo4d_ext-method	phylo4d_ext-class
showSubNodes	showSubNodes
snbranch	phylo4d_ext-class
snbranch,list-method	phylo4d_ext-class
snbranch,phylo4d_ext-method	phylo4d_ext-class
sndata	phylo4d_ext-class
sndata,list-method	phylo4d_ext-class
sndata,phylo4d_ext-method	phylo4d_ext-class
sndata<-	phylo4d_ext-class
sndata<-,list-method	phylo4d_ext-class
sndata<-,phylo4d_ext-method	phylo4d_ext-class
snid	phylo4d_ext-class
snid,list-method	phylo4d_ext-class
snid,phylo4d_ext-method	phylo4d_ext-class
snposition	phylo4d_ext-class
snposition,list-method	phylo4d_ext-class
snposition,phylo4d_ext-method	phylo4d_ext-class
strip	strip
tipdate.ci	tipdate.ci
treeHeight	treeHeight
treeHeight,phylo4-method	treeHeight
treeHeight,phylo4d-method	treeHeight
treeHeight,phylo4d_ext-method	treeHeight
treeHeight-methods	treeHeight
validPhylo4d_ext	validPhylo4d_ext
weight	phylo4d_ext-class
weight,list-method	phylo4d_ext-class
weight,phylo4d_ext-method	phylo4d_ext-class
weight<-	phylo4d_ext-class
weight<-,list-method	phylo4d_ext-class
weight<-,phylo4d_ext-method	phylo4d_ext-class
write.nexus.simmap	write.nexus.simmap
write.simmap	write.simmap
write.simmap.new	write.simmap.new
write.simmap.old	write.simmap.old
