# Time-of-flight mass spectra signal processing

## Documentation for package ‘rTOFsPRO’ version 1.4.1

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

aplMeta | alignedPeakListMetaData generation
chargeBkgr_call | charge accumulation baseline calculation
circShift | Circular shift of data record
coefNLFiltGG | Nonlinear target filter coefficients for Gaussian wavelet
coefNLFiltGL | Nonlinear target filter coefficients for Gaussian-Lorentizan signal
coefNLFiltLL | Nonlinear target filter coefficients for Lorentzian signal
coefOptFiltGG | Optimal linear target filter coefficients for Gaussian wavelet
coefOptFiltGL | Optimal linear target filter coefficients for Gaussian-Lorentzian peak
coefOptFiltLL | Optimal linear target filter coefficients for Lorentzian signal
coefTrunc | Wavelet truncation
ExpBkgr_call | Analytical background correction
findBsEnv | Baseline envelope calculation
gausHalf | Left-half Gaussian wavelet
gausRHalf | Right-half Gaussian wavelet
geomavFilt | Non-linear target filter
globalAlign | Global alignment
hwfmGausPeak | Gaussian peak-HWFM estimate
locjitdet | Local shift detection
lorHalf | Right-half Lorentzian wavelet
lorLHalf | Left-half Lorentzian wavelet
mainRTOFsPROc | Signal processing for TOF MS
mainRTOFsPROcModular | Signal processing for TOF MS
matchedFilter | Matched filter
matchFiltCoefGG | Matched filter coefficients for Gaussian signal
matchFiltCoefGL | Matched filter coefficients for Gaussian-Lorentzian signal
matchFiltCoefLL | Matched filter coefficients for Lorentzian signal
mavSmoothing | Moving average filter
msResample | Integrative down-sampling
myxcorr | Cross-correlation of two vectors
noiseEstmtr2 | Gaussian noise STD-estimator
offsetBkgr_call | Constant ADC offset background
optFilt | Optimal linear filter
OutputForML | Output for Matlab
peakAlignAv | Peak alignment to average spectrum
peakWidth | Peak half-width estimate
pedRmMAV_call | Removes peak pedestal
pivPeak | Pivot peak detection
pivpeak | Pivot peak detection
plMeta | Peak list meta-data maker
trgFilt | Target filter coefficients
trivPP_call | Trivial peak detection
userError | Stops execution with user defined message