# A package for estimating age-specific survival from incomplete capture-recapture/recovery data

## Documentation for package ‘BaSTA’ version 1.1

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

BaSTA-package | BaSTA: a package for parametric Bayesian estimation of age-specific survival for truncated and censored capture-recapture/recovery records.
BaSTA | BaSTA: a package for parametric Bayesian estimation of age-specific survival for truncated and censored capture-recapture/recovery records.
basta | Parametric Bayesian estimation of age-specific survival for left-truncated and right-censored capture-recapture/recovery data.
basta.default | Parametric Bayesian estimation of age-specific survival for left-truncated and right-censored capture-recapture/recovery data.
CensusToCaptHist | Constructs capture-history matrix from census matrix to be used in Bayesian Survival Trajectory Analysis (BaSTA).
DataCheck | A function to check the input data file for a Bayesian Survival Trajectory Analysis (BaSTA) analysis.
MakeCovMat | Function to build a matrix of covariates (i.e. design matrix) for a Bayesian Survival Trajectory Analysis (BaSTA) analysis.
MakeLifeTable | A function for calculating standard cohort-based life tables from age at death data.
plot.basta | Summarizing and plotting Bayesian Survival Trajectory Analysis (BaSTA) model outputs.
PlotMultiMort | Plots mortality trajectories for multiple BaSTA objects.
print.basta | Summarizing and plotting Bayesian Survival Trajectory Analysis (BaSTA) model outputs.
sim1 | Simulated dataset to demonstrate Bayesian Survival Trajectory Analysis (BaSTA)
sim1Out | Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated dataset
summary.basta | Summarizing and plotting Bayesian Survival Trajectory Analysis (BaSTA) model outputs.