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A B C D E F G H I L M N O P Q R S T U W Y Z
| CHNOSZ-package | Chemical Thermodynamics and Activity Diagrams |
| add.obigt | Functions to Work with the Thermodynamic Database |
| add.protein | Functions to Work with the Thermodynamic Database |
| affinity | Chemical Affinities of Formation Reactions |
| allparents | Extract Data from NCBI Taxonomy Files |
| aminoacids | Functions to Work with Sequence Data |
| anim | Functions to Make Animations |
| anim.carboxylase | Functions to Make Animations |
| anim.plasma | Functions to Make Animations |
| anim.TCA | Functions to Make Animations |
| apc | Mass Transfer Calculations |
| axis.label | Functions to Create and Modify Plots |
| basis | Basis Species |
| basis.comp | Functions for Miscellaneous Tasks |
| browse.refs | Functions to Work with the Thermodynamic Database |
| buffer | Calculating Buffered Chemical Activities |
| buffers | Thermodynamic Database and System Definition |
| c2s | Functions to Manipulate Character Objects |
| caller.name | Functions for Miscellaneous Tasks |
| can.be.numeric | Functions to Manipulate Character Objects |
| cgl | Equations of State |
| change | Functions to Work with the Thermodynamic Database |
| check.obigt | Functions to Work with the Thermodynamic Database |
| checkEOS | Functions to Work with the Thermodynamic Database |
| checkGHS | Functions to Work with the Thermodynamic Database |
| convert | Functions to Convert Units |
| cvrmsd | Functions for Various Statistical Operations |
| def2gi | Functions to Work with BLAST Output Files |
| describe | Functions for Miscellaneous Tasks |
| diagram | Calculate and Plot Equilibrium Chemical Activities of Species |
| dimSums | Functions to Work with Multidimensional Arrays |
| dPdTtr | Functions for Miscellaneous Tasks |
| draw.transfer | Mass Transfer Calculations |
| element | Functions to Work with Chemical Formulas |
| energy | Chemical Affinities of Formation Reactions |
| energy.args | Chemical Affinities of Formation Reactions |
| envert | Functions to Convert Units |
| eos.args | Functions for Processing Argument Lists |
| EOScalc | Regress equations-of-state parameters for aqueous species |
| EOScoeffs | Regress equations-of-state parameters for aqueous species |
| EOSlab | Regress equations-of-state parameters for aqueous species |
| EOSplot | Regress equations-of-state parameters for aqueous species |
| EOSregress | Regress equations-of-state parameters for aqueous species |
| EOSvar | Regress equations-of-state parameters for aqueous species |
| eqdata | Read data from an EQ6 output file |
| equil.boltz | Calculate Logarithms of Activity of Species |
| equil.react | Calculate Logarithms of Activity of Species |
| examples | Run examples from the documentation |
| expand.formula | Functions to Work with Chemical Formulas |
| extdata | Extra Data |
| extremes | Diversity Calculations for Chemical Species |
| feldspar | Mass Transfer Calculations |
| findit | Multidimensionally Optimize Chemical Activities |
| get.expr | Protein Expression Data |
| get.protein | Proteins from Model Organisms |
| getnames | Extract Data from NCBI Taxonomy Files |
| getnodes | Extract Data from NCBI Taxonomy Files |
| getrank | Extract Data from NCBI Taxonomy Files |
| GHS | Functions to Work with Chemical Formulas |
| grep.file | Functions for Accessing FASTA Files |
| groups | Thermodynamic Database and System Definition |
| hkf | Equations of State |
| id.blast | Functions to Work with BLAST Output Files |
| info | Search the Thermodynamic Database |
| ionize | Ionization Properties of Proteins |
| is.fasta | Functions for Accessing FASTA Files |
| label.plot | Functions to Create and Modify Plots |
| list2array | Functions to Work with Multidimensional Arrays |
| lograt | Functions for Various Statistical Operations |
| longex | Run examples from the documentation |
| lsub | Functions to Work with Lists |
| lsum | Functions to Work with Lists |
| makeup | Chemical Formulas and Compositions |
| mod.buffer | Calculating Buffered Chemical Activities |
| mod.obigt | Functions to Work with the Thermodynamic Database |
| MP90.cp | Functions for Miscellaneous Tasks |
| mtitle | Functions to Create and Modify Plots |
| mylapply | Functions to Work with Lists |
| nonideal | Functions for Miscellaneous Tasks |
| nucleicacids | Functions to Work with Sequence Data |
| nuts | Functions to Convert Units |
| OBIGT | Thermodynamic Database and System Definition |
| obigt2eos | Functions to Work with the Thermodynamic Database |
| opt | Thermodynamic Database and System Definition |
| outvert | Functions to Convert Units |
| parent | Extract Data from NCBI Taxonomy Files |
| plot.findit | Multidimensionally Optimize Chemical Activities |
| pprod | Functions to Work with Lists |
| protein | Properties of Proteins |
| protein.formula | Functions to Work with Chemical Formulas |
| protein.info | Properties of Proteins |
| protein.length | Functions for Miscellaneous Tasks |
| protein.residue | Properties of Proteins |
| psum | Functions to Work with Lists |
| qqr | Functions for Various Statistical Operations |
| read.blast | Functions to Work with BLAST Output Files |
| read.fasta | Functions for Accessing FASTA Files |
| read.supcrt | Properties of Species and Reactions |
| refs | Thermodynamic Database and System Definition |
| residualsplot | Functions to Create and Modify Plots |
| residue.formula | Functions to Work with Chemical Formulas |
| residue.info | Properties of Proteins |
| revisit | Diversity Calculations for Chemical Species |
| richness | Diversity Calculations for Chemical Species |
| rmsd | Functions for Various Statistical Operations |
| s2c | Functions to Manipulate Character Objects |
| sciname | Extract Data from NCBI Taxonomy Files |
| slice | Functions to Work with Multidimensional Arrays |
| slice.affinity | Functions to Work with Multidimensional Arrays |
| spearman | Functions for Various Statistical Operations |
| species | Species of Interest |
| species.label | Functions to Create and Modify Plots |
| splitline | Functions for Accessing FASTA Files |
| state.args | Functions for Processing Argument Lists |
| stress | Thermodynamic Database and System Definition |
| strip | Calculate and Plot Equilibrium Chemical Activities of Species |
| subcrt | Properties of Species and Reactions |
| sum.refseq | Functions for Accessing FASTA Files |
| taxonomy | Extract Data from NCBI Taxonomy Files |
| thermo | Thermodynamic Database and System Definition |
| thermo.axis | Functions to Create and Modify Plots |
| thermo.plot.new | Functions to Create and Modify Plots |
| thermo.postscript | Functions to Create and Modify Plots |
| TP.args | Functions for Processing Argument Lists |
| transfer | Mass Transfer Calculations |
| trimfas | Functions for Accessing FASTA Files |
| Ttr | Functions for Miscellaneous Tasks |
| unitize | Functions for Miscellaneous Tasks |
| util.args | Functions for Processing Argument Lists |
| util.array | Functions to Work with Multidimensional Arrays |
| util.blast | Functions to Work with BLAST Output Files |
| util.character | Functions to Manipulate Character Objects |
| util.data | Functions to Work with the Thermodynamic Database |
| util.fasta | Functions for Accessing FASTA Files |
| util.formula | Functions to Work with Chemical Formulas |
| util.list | Functions to Work with Lists |
| util.misc | Functions for Miscellaneous Tasks |
| util.plot | Functions to Create and Modify Plots |
| util.seq | Functions to Work with Sequence Data |
| util.stat | Functions for Various Statistical Operations |
| util.units | Functions to Convert Units |
| water | Properties of Water |
| water.AW90 | Properties of Water |
| water.IAPWS95 | Properties of Water |
| water.lines | Functions to Create and Modify Plots |
| water.SUPCRT92 | Properties of Water |
| water.WP02 | Properties of Water |
| where.extreme | Diversity Calculations for Chemical Species |
| which.balance | Functions for Miscellaneous Tasks |
| which.pmax | Functions to Work with Lists |
| write.blast | Functions to Work with BLAST Output Files |
| write.supcrt | Properties of Species and Reactions |
| yeastgfp | Proteins from Model Organisms |
| ZC | Functions to Work with Chemical Formulas |