HMPTrees-package	HMPTrees-package
checkTreeValidity	checkTreeValidity
checkValidHelp	HMPTrees-internal
compareTwoDataSets	compareTwoDataSets
createAndPlot	createAndPlot
createTrees	createTrees
displayLegend	displayLegend
formatData	formatData
generateTree	generateTree
getBranchSizes	HMPTrees-internal
getMLEandLoglike	getMLEandLoglike
getRelations	HMPTrees-internal
getTaxaDepth	HMPTrees-internal
getTopXPhylum	HMPTrees-internal
helpRelations	HMPTrees-internal
HMPTrees	HMPTrees-package
HMPTrees-internal	HMPTrees-internal
mergeDataSets	mergeDataSets
plotTree	plotTree
plotTreeDataMDS	plotTreeDataMDS
rowMatch	HMPTrees-internal
saliva	saliva
stool	stool
throat	throat
transformHMPtoHMPTree	transformHMPtoHMPTree
transformHMPTreetoHMP	transformHMPTreetoHMP
traverseHelp	HMPTrees-internal
traverseTree	HMPTrees-internal
trimToTaxaLevel	trimToTaxaLevel
