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| MARSS-package | Multivariate Autoregressive State-Space Model Estimation |
| alldefaults | MARSS function defaults and allowed methods |
| allowed | MARSS function defaults and allowed methods |
| allowed.methods | MARSS function defaults and allowed methods |
| as.design | Matrix Utilities |
| as.marssm | Model Objects |
| checkPopWrap | Check Arguments to popWrap() |
| CSEGriskfigure | Plot Extinction Risk Metrics |
| CSEGtmufigure | Plot Forecast Uncertainty |
| describe.marssm | MARSS function defaults and allowed methods |
| graywhales | Population Data Sets |
| grouse | Population Data Sets |
| harborSeal | Harbor Seal Population Count Data (Log counts) |
| harborSealnomiss | Harbor Seal Population Count Data (Log counts) |
| harborSealWA | Harbor Seal Population Count Data (Log counts) |
| Imat | Matrix Utilities |
| is.blockdiag | Matrix Utilities |
| is.blockequaltri | Matrix Utilities |
| is.blockunconst | Matrix Utilities |
| is.design | Matrix Utilities |
| is.diagonal | Matrix Utilities |
| is.equaltri | Matrix Utilities |
| is.fixed | Matrix Utilities |
| is.identity | Matrix Utilities |
| is.marssm | Model Objects |
| is.marssMLE | Maximum Likelihood MARSS Estimation Object |
| is.wholenumber | Matrix Utilities |
| isleRoyal | Population Data Sets |
| ivesDataByWeek | Plankton Data Sets |
| ivesDataLP | Plankton Data Sets |
| kem.methods | MARSS function defaults and allowed methods |
| kestrel | Population Data Sets |
| lakeWAplankton | Plankton Data Sets |
| loggerhead | Loggerhead Turtle Tracking Data |
| loggerheadNoisy | Loggerhead Turtle Tracking Data |
| makediag | Matrix Utilities |
| MARSS | Interface MARSS Model Specification and Estimation |
| MARSSaic | AIC for MARSS models |
| MARSSapplynames | Names for marssMLE Object Components |
| MARSSboot | Bootstrap MARSS Parameter Estimates |
| MARSScheckdims | MARSS Utilities |
| MARSScheckpar | MARSS Utilities |
| MARSShatyt | Compute Expected Value of Y,YY, and YX |
| MARSShessian | MARSS Parameter Variance-Covariance Matrix from the Hessian Matrix |
| MARSSinits | Initial Values for MLE |
| MARSSinnovationsboot | Bootstrapped Data using Stoffer and Wall's Algorithm |
| MARSSkem | Maximum Likelihood Estimation for Multivariate Autoregressive State-Space Models |
| MARSSkemcheck | Model Checking for MLE objects passed to MARSSkem |
| MARSSkf | Kalman Filtering and Smoothing |
| MARSSkfas | Kalman Filtering and Smoothing |
| MARSSLLprofile | Log-likelihood profiles for MARSS Parameters |
| marssm | Model Objects |
| marssm-class | Class "marssm" |
| MARSSmcinit | Monte Carlo Initialization |
| marssMLE | Maximum Likelihood MARSS Estimation Object |
| marssMLE-class | Class "marssMLE" |
| MARSSoptim | Parameter estimation for MARSS models using optim |
| MARSSoptions | Change MARSS Defaults Utility |
| MARSSparamCIs | Confidence Intervals for MARSS Parameters |
| MARSSresids | MARSS standardized residuals |
| MARSSsettings | Interface MARSS Model Specification and Estimation |
| MARSSsimulate | Simulate Data from a MARSS Model and Parameter Estimates |
| MARSSvectorizeparam | Vector to Parameter Matrix Conversion |
| model.elem | MARSS function defaults and allowed methods |
| model.elem.w.V0 | MARSS function defaults and allowed methods |
| neglogLik | Parameter estimation for MARSS models using optim |
| okanaganRedds | Population Data Sets |
| optim.methods | MARSS function defaults and allowed methods |
| popWrap | Wrapper Objects |
| popWrap-class | Class "popWrap" |
| prairiechicken | Population Data Sets |
| print-method | Class "marssMLE" |
| print-method | Class "marssm" |
| rockfish | Population Data Sets |
| stdInnov | Standardized Innovations |
| summary-method | Class "marssMLE" |
| summary-method | Class "marssm" |
| takediag | Matrix Utilities |
| unvec | Matrix Utilities |
| vec | Matrix Utilities |
| wilddogs | Population Data Sets |