\documentclass[10pt]{article}
%\VignetteIndexEntry{Rcpp-extending}
\usepackage{vmargin}
\setmargrb{0.75in}{0.75in}{0.75in}{0.75in}

\usepackage{color, alltt}
\usepackage[authoryear,round,longnamesfirst]{natbib}
\usepackage[colorlinks]{hyperref}
\definecolor{link}{rgb}{0,0,0.3}	%% next few lines courtesy of RJournal.sty
\hypersetup{
    colorlinks,%
    citecolor=link,%
    filecolor=link,%
    linkcolor=link,%
    urlcolor=link
}

\newcommand{\proglang}[1]{\textsf{#1}}
\newcommand{\pkg}[1]{{\fontseries{b}\selectfont #1}}

%% defined as a stop-gap measure til interaction with highlight is sorted out
\newcommand{\hlboxlessthan}{   \hlnormalsizeboxlessthan}
\newcommand{\hlboxgreaterthan}{\hlnormalsizeboxgreaterthan}
\newcommand{\hlboxopenbrace}{  \hlnormalsizeboxopenbrace}
\newcommand{\hlboxclosebrace}{ \hlnormalsizeboxclosebrace}
\newcommand{\hlboxbacktick}{   \hlnormalsizeboxbacktick}
\newcommand{\hlboxunderscore}{ \hlnormalsizeboxunderscore}

<<echo=FALSE,print=FALSE>>=
prettyVersion <- packageDescription("Rcpp")$Version
prettyDate <- format(Sys.Date(), "%B %e, %Y")
@

\author{Dirk Eddelbuettel \and Romain Fran\c{c}ois}
\title{Extending \pkg{Rcpp}}
\date{\pkg{Rcpp} version \Sexpr{prettyVersion} as of \Sexpr{prettyDate}}

<<echo=FALSE>>=
link <- function( f, package, text = f, root = "http://finzi.psych.upenn.edu/R/library/" ){
	h <- if( missing(package) ) {
		as.character( help( f ) )
	} else {
		as.character( help( f, package = paste( package, sep = "" ) ) )
	}
	if( ! length(h) ){
		sprintf( "\\\\textbf{%s}", f )
	} else {
		rx <- "^.*/([^/]*?)/help/(.*?)$"
		package <- sub( rx, "\\1", h, perl = TRUE )
		page <- sub( rx, "\\2", h, perl = TRUE )
		sprintf( "\\\\href{%s%s/html/%s.html}{\\\\texttt{%s}}", root, package, page, text )
	}
}
linkS4class <- function( cl, package, text = cl, root = "http://finzi.psych.upenn.edu/R/library/" ){
	link( sprintf("%s-class", cl), package, text, root )
}

require( inline )
require( Rcpp )
@

\begin{document}
\maketitle

\abstract{
  \noindent
  This note provides an overview of the steps programmers should follow to
  extend \pkg{Rcpp} \citep{CRAN:Rcpp,JSS:Rcpp} for use with their own classes. This document
  is based on our experience in extending \pkg{Rcpp} to work with the
  \pkg{Armadillo} \citep{Sanderson:2010:Armadillo} classes, available in the separate package
  \pkg{RcppArmadillo} \citep{CRAN:RcppArmadillo}. This document assumes
  knowledge of \pkg{Rcpp} as well as some knowledge of \proglang{C++}
  templates \citep{Abrahams+Gurtovoy:2004:TemplateMetaprogramming}.
}


\section{Introduction}

\pkg{Rcpp} facilitates data interchange between \proglang{R} and
\proglang{C++} through the templated functions \texttt{Rcpp::as} (for
conversion of objects from \proglang{R} to \proglang{C++}) and
\texttt{Rcpp::wrap} (for conversion from \proglang{C++} to \proglang{R}).  In
other words, we convert between the so-called \proglang{S}-expression
pointers (in type \texttt{SEXP}) to a templated \proglang{C++} type, and vice
versa.  The corresponding function declarations are as follows:

<<lang=cpp>>=
// conversion from R to C++
template <typename T> T as( SEXP m_sexp) ;

// conversion from C++ to R
template <typename T> SEXP wrap(const T& object) ;
@

These converters are often used implicitly, as in the following code chunk:

<<echo=FALSE>>=
code <- '
// we get a list from R
List input(input_) ;

// pull std::vector<double> from R list
// this is achieved through an implicit call to Rcpp::as
std::vector<double> x = input["x"] ;

// return an R list
// this is achieved through implicit call to Rcpp::wrap
return List::create(
    _["front"] = x.front(),
    _["back"]  = x.back()
    ) ;
'
writeLines( code, "code.cpp" )
@
<<echo=FALSE,results=tex>>=
external_highlight( "code.cpp", type = "LATEX", doc = FALSE )
@

<<>>=
fx <- cxxfunction( signature( input_ = "list"),
	paste( readLines( "code.cpp" ), collapse = "\n" ),
	plugin = "Rcpp"
	)
input <- list( x = seq(1, 10, by = 0.5) )
fx( input )
@

The \pkg{Rcpp} converter function \texttt{Rcpp::as} and \texttt{Rcpp::wrap} have been
designed to be extensible to user-defined types and third-party types.

\section[Extending Rcpp::wrap]{Extending \texttt{Rcpp::wrap} }

The \pkg{Rcpp::wrap} converter is extensible in essentially two ways : intrusive
and non-intrusive.

\subsection{Intrusive extension}

When extending \pkg{Rcpp} with your own data type, the recommended way is to
implement a conversion to \texttt{SEXP}. This lets \texttt{Rcpp::wrap} know
about the new data type.  The template meta programming (or TMP) dispatch is able to
recognize that a type is convertible to a \texttt{SEXP} and
\texttt{Rcpp::wrap} will use that conversion.

The caveat is that the type must be declared before the main header
file \texttt{Rcpp.h} is included.

<<lang=cpp>>=
#include <RcppCommon.h>

class Foo {
    public:
        Foo() ;

        // this operator enables implicit Rcpp::wrap
        operator SEXP() ;
}

#include <Rcpp.h>
@

This is called \emph{intrusive} because the conversion to \texttt{SEXP}
operator has to be declared within the class.

\subsection{Non-intrusive extension}

It is often desirable to offer automatic conversion to third-party types, over
which the developer has no control and can therefore not include a conversion
to \texttt{SEXP} operator in the class definition.

To provide automatic conversion from \proglang{C++} to \proglang{R}, one must
declare a specialization of the \texttt{Rcpp::wrap} template between the
includes of \texttt{RcppCommon.h} and \texttt{Rcpp.h}.

<<lang=cpp>>=
#include <RcppCommon.h>

// third party library that declares class Bar
#include <foobar.h>

// declaring the specialization
namespace Rcpp {
    template <> SEXP wrap( const Bar& ) ;
}

// this must appear after the specialization,
// otherwise the specialization will not be seen by Rcpp types
#include <Rcpp.h>
@

It should be noted that only the declaration is required. The implementation
can appear after the \texttt{Rcpp.h} file is included, and therefore take
full advantage of the \pkg{Rcpp} type system.

\subsection{Templates and partial specialization}

It is perfectly valid to declare a partial specialization for the
\texttt{Rcpp::wrap} template. The compiler will identify the appropriate
overload:

<<lang=cpp>>=
#include <RcppCommon.h>

// third party library that declares template class Bling<T>
#include <foobar.h>

// declaring the partial specialization
namespace Rcpp {
    namespace traits {

        template <typename T> SEXP wrap( const Bling<T>& ) ;

    }
}

// this must appear after the specialization,
// otherwise the specialization will not be seen by Rcpp types
#include <Rcpp.h>

@


\section[Extending Rcpp::as]{Extending \texttt{Rcpp::as}}

Conversion from \proglang{R} to \proglang{C++} is also possible
in both intrusive and non-intrusive ways.

\subsection{Intrusive extension}

As part of its template meta programming dispatch logic, \pkg{Rcpp::as}
will attempt to use the constructor of the target class taking a \texttt{SEXP}.

<<lang=cpp>>=
#include <RcppCommon.h>

#include <RcppCommon.h>

class Foo{
    public:
        Foo() ;

        // this constructor enables implicit Rcpp::as
        Foo(SEXP) ;
}

#include <Rcpp.h>


// this must appear after the specialization,
// otherwise the specialization will not be seen by Rcpp types
#include <Rcpp.h>
@

\subsection{Non intrusive extension}

It is also possible to fully specialize \texttt{Rcpp::as} to enable
non intrusive implicit conversion capabilities.

<<lang=cpp>>=
#include <RcppCommon.h>

// third party library that declares class Bar
#include <foobar.h>

// declaring the specialization
namespace Rcpp {
    template <> Bar as( SEXP ) ;
}

// this must appear after the specialization,
// otherwise the specialization will not be seen by Rcpp types
#include <Rcpp.h>
@

\subsection{Templates and partial specialization}

The signature of \texttt{Rcpp::as} does not allow partial specialization.
When exposing a templated class to \texttt{Rcpp::as}, the programmer must
specialize the \pkg{Rcpp::traits::Exporter} template class. The TMP dispatch
will recognize that a specialization of \texttt{Exporter} is available
and delegate the conversion to this class. \pkg{Rcpp} defines
the \texttt{Rcpp::traits::Exporter} template class as follows :

<<lang=cpp>>=
namespace Rcpp {
    namespace traits {

        template <typename T> class Exporter{
        public:
            Exporter( SEXP x ) : t(x){}
            inline T get(){ return t ; }

        private:
            T t ;
        } ;
    }
}
@

This is the reason why the default behavior of \texttt{Rcpp::as} is to
invoke the constructor of the type \texttt{T} taking a \texttt{SEXP}.

Since partial specialization of class templates is allowed, we can expose
a set of classes as follows:

<<lang=cpp>>=
#include <RcppCommon.h>

// third party library that declares template class Bling<T>
#include <foobar.h>

// declaring the partial specialization
namespace Rcpp {
    namespace traits {
        template <typename T> class Exporter< Bling<T> >;
    }
}

// this must appear after the specialization,
// otherwise the specialization will not be seen by Rcpp types
#include <Rcpp.h>
@

Using this approach, the requirements for the \texttt{Exporter< Bling<T> >}
class are:
\begin{itemize}
\item it should have a constructor taking a \texttt{SEXP}
\item it should have a methods called \texttt{get} that returns an instance
of the \texttt{Bling<T>} type.
\end{itemize}

<<echo=FALSE>>=
unlink( "code.cpp" )
@

\section{Summary}

The \pkg{Rcpp} package greatly facilitates the transfer of objects between
\proglang{R} and \proglang{C++}. This note has shown how to extend \pkg{Rcpp}
to either user-defined or third-party classes via the \texttt{Rcpp::as} and
\texttt{Rcpp::wrap} template functions. Both intrusive and non-intrusive
approaches were discussed.

\bibliographystyle{plainnat}
\bibliography{Rcpp}

\end{document}

