AlexanderBriggs         Alexander-Briggs reduction of a polygonal knot
                        or link
HOMFLY2Jones            Convert the HOMFLY polynomial into the
                        Alexander or Jones polynomials
HOMFLY2mirror           Convert the HOMFLY polynomial of a knot into
                        the one of its mirror image
HOMFLYpolynomial        Compute the HOMFLY polynomial of a polygonal
                        link
PCAProjection           Two-dimensional projection by Principal
                        Component Analysis
Rknots-package          Rknots: knots detection with R
Rolfsen.table           Knots (up to 10 crossings) three dimensional
                        coordinates, enumerated accordingly to Rolfsen.
buildLsw                Build an L switch configuration
buildLzero              Build an L zero configuration
centroidClosure         Structure closure with the centroid method
fileImport              Import or fetch a PDB file and build the
                        alpha-Carbon trace model
findGaps                Find gaps in proteins based on euclidean
                        distance between residues
findKnot                Global wrapper function for finding knots in 3D
                        structures
findProteinKnot         Global wrapper function for finding knots in
                        proteins via the HOMFLY polynomial
grm                     Generalized Reidemeister Move
intersectionMatrix      Compute the intersection matrix of a polygonal
                        link
link.table              Links three dimensional coordinates and
                        separators
linkingNumber           Compute the linking number of a polygonal link
mVA                     Compute the multivariable Alexander polynomial
                        of a polygonal link
msr                     Minimal Structure Reduction
plotKnot3D              3D plot of a polygonal link
plotKnotDiagram         Plot a knot or link diagram
rMatrix                 Rotation matrix along the z axis
singleIntersection      Find the intersection of two edges
skeinIterator           Iterate the skein relation to build a skein
                        tree of a polygonal link
skeinSign               Compute the skein sign of a crossing
