# Using graphs as a navigational infrastructure.

## Documentation for package ‘RnavGraph’ version 0.1.2

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.
- Code demos. Use demo() to run them.
- Package NEWS.

## Help Pages

RnavGraph-package | Overview RnavGraph package
closeViz | Method that gets called when switching away from a graph that is connected with the visualization instructions
closeViz-method | Initialization of a new Display
closeViz-methods | Initialization of a new Display
completegraph | Create a complete graph of class graphAM
initializeViz | Method that gets called for initializing a display for some visualization instructions
initializeViz-method | Initialization of a new Display
initializeViz-methods | Initialization of a new Display
linegraph | Linegraph of a graph
linegraph-method | Linegraph of a graph
linegraph-methods | Linegraph of a graph
names-method | Show the variable names of a NG_data object
names-methods | Show the variable names of a NG_data object
names<--method | Change the names of a NG_data object
navGraph | Start an navGraph session
newgraph | Create a graph object of class graph
ng_2d | Visualization instruction for 2d scatterplots on a tk2d display
ng_2d_ggobi | Visualization instruction for 2d scatterplots on a ggobi display
ng_2d_myplot | Visualization instruction for 2d scatterplots on a user defined display
ng_data | Create an NG_data object to be used by a navGraph session
ng_get | Extract data from a NG_data, NG_graph, NG_path or navgraph handler object.
ng_get-method | Access data from a NG_... object
ng_get-methods | Access data from a NG_... object
ng_get_color | Extract point coloring from an active navGraph session for a particular data set.
ng_get_size | Extract point sizes from an active navGraph session for a particular data set.
ng_graph | Create an NG_data object to be used by a navGraph session
ng_image_array_gray | Convert a matrix or data.frame of image data into a NG_image object.
ng_image_files | Import color image files (png, jpg, bmp, etc...) into a NG_image object
ng_set | Shows which data can be modified in a NG_data, NG_graph, NG_path or navgraph handler object.
ng_set-method | Change data in NG_... objects
ng_set-methods | Change data in NG_... objects
ng_set<- | Modify data in a NG_data, NG_graph, NG_path or navgraph handler object.
ng_set<--method | ~~ Methods for Function ng_set<- ~~
ng_set<--methods | ~~ Methods for Function ng_set<- ~~
ng_set_color<- | Change colors of data points in an active navGraph session
ng_set_color<--method | Change colors of data points in an active navGraph session
ng_set_color<--methods | Change colors of data points in an active navGraph session
ng_set_size<- | Change sizes of data points in an active navGraph session
ng_set_size<--method | Change sizes of data points in an active navGraph session
ng_set_size<--methods | Change sizes of data points in an active navGraph session
ng_update | Synchronize a navGraph handler with a running navGraph sesson
NG_Visualization-class | Class '"NG_Visualization"'
ng_walk | Walk a path on the current graph in a navGraph session
olive | Fatty Acid Composition of Italian Olive Oils
plot-method | Plot the graph saved in a NG_data object.
plot-methods | Plot the graph saved in a NG_data object.
RnavGraph | Overview RnavGraph package
scagEdgeWeights | Create a from-to edge matrix with the scagnostic weights
scagGraph | Create a list of graphs, given the scagnostics edge weights
scagNav | Start a navGraph session and filter the navigation graph's node according to some scagnostic measures
shortnames | Returns the shortnames of a NG_data object.
shortnames-method | Show the shortnames of a NG_data object
shortnames-methods | Show the shortnames of a NG_data object
shortnames<- | Modify the shortnames of a NG_data object.
shortnames<--method | Change the shortnames of a NG_data object
shortnames<--methods | Change the shortnames of a NG_data object
updateViz | Method that gets called when bullet state is changed on a graph that is connected with the particular visualization instructions
updateViz-method | Initialization of a new Display
updateViz-methods | Initialization of a new Display