GenomePlot              Produces a genome plot.
Jspline                 Spline fitting and interpolation function.
MAPlot1                 Produce a MAplot showing points retained vs.
                        points excluded.
MAPlot2                 Produce a MAplot showing points fitted vs.
                        points interpolated.
MakePDF                 Write a PDF containing some normalisation
                        plots.
ProPlot                 Produce a simple overview plot of the data.
SetJ                    Function to set the java class path and heap
                        size.
WriteGFF                Function to write a GFF formatted file.
WriteQC                 Function to produce a QC report.
aCGH.Spline             Package for robust spline interpolation
                        normalisation on dual color aCGH data.
batch.spline            Function for batch processing.
dLRs                    Caculate the DLR Spread.
f.Noise                 Noise calculating function.
fe.extract              Function to extract Feature Extraction data.
fe.read                 Function to read Feature Extraction files.
fe.write                Function to output a Feature extraction
                        formatted file.
nim.read                Function to read a Nimblegen "SEG_MNT.txt"
                        file.
nim.write               Function to output a Nimblegen formatted file.
run.spline              Function to process a single file.
segN                    Segmentation method.
