add.transparency        internal auteur functions
auteur                  main: Bayesian Inference of Trait Evolutionary
                        Process
calibrate.proposalwidth
                        initialize proposal width
compare.rates           statistical comparison of posterior rate
                        estimates
intercalate.samples     pool data
phenogram               trait evolution along phylogenies
pool.rjmcmcsamples      combining posterior samples from Bayesian
                        analysis
primates                example datasets for auteur
randomization.test      statistical comparison of sets of values by
                        randomization
rjmcmc.bm               Bayesian sampling of shifts in
                        trait-evolutionary rates: Brownian motion
shifts.plot             plotting of Bayesian posterior samples
trace.plot              plotting of Bayesian posterior samples
tracer                  plotting of Bayesian posterior samples
vmat                    computation of phylogenetic variance-covariance
                        matrix
