* using log directory 'd:/Rcompile/CRANpkg/local/2.13/NestedCohort.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'NestedCohort/DESCRIPTION' ... OK
* this is package 'NestedCohort' version '1.1-2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'NestedCohort' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file(s) in a non-standard place:
  CITATION
Most likely inst/CITATION should be used instead.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
nested.coxph: no visible binding for global variable 'p.i.h.a.t.'
nested.km: no visible binding for global variable 'p.i.h.a.t.'
nested.stdsurv: no visible binding for global variable 'p.i.h.a.t.'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking for left-overs from vignette generation ... NOTE
  file 'inst/doc/Rplots.ps', 'inst/doc/Rplots.pdf' will not be installed: please remove it
* checking sizes of PDF files under inst/doc ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... OK
* checking re-building of vignettes ... NOTE
Error in re-building vignettes:
  ...
Q3      0.6743 0.07402      0.5065       0.7959
Q4      0.9025 0.05262      0.7316       0.9669
Crude   0.7783 0.02283      0.7296       0.8194

Standardized Risk Differences vs. znquartiles = Q4 by time 5980 
           Risk Difference  StdErr 95% CI Left 95% CI Right
Q4 - Q1             0.3972 0.09008     0.22060       0.5737
Q4 - Q2             0.1727 0.09603    -0.01557       0.3609
Q4 - Q3             0.2282 0.08940     0.05294       0.4034
Q4 - Crude          0.1242 0.05405     0.01823       0.2301

PAR if everyone had znquartiles = Q4 
    Estimate StdErr 95% PAR CI Left 95% PAR CI Right
PAR   0.5602 0.2347         -0.2519           0.8455

Warning: running command '"d:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "NestedCohort.tex"  -I "d:/Rcompile/recent/R-2.13.2/share/texmf/tex/latex" -I "d:/Rcompile/recent/R-2.13.2/share/texmf/bibtex/bst"' had status 1
Error: running 'texi2dvi' on 'NestedCohort.tex' failed

LaTeX errors:
! LaTeX Error: File `psfig.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

Execution halted

* checking PDF version of manual ... OK