* using log directory 'd:/Rcompile/CRANpkg/local/2.13/RobLoxBioC.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'RobLoxBioC/DESCRIPTION' ... OK
* this is package 'RobLoxBioC' version '0.8'
* package encoding: latin1
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RobLoxBioC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking examples ... OK
* checking differences from 'RobLoxBioC-Ex.Rout' to 'RobLoxBioC-Ex.Rout.save' ...
6,7c6,7
<   'browseVignettes()'. To cite Bioconductor, see
<   'citation("Biobase")' and for packages 'citation("pkgname")'.
---
>   'openVignette()'. To cite Bioconductor, see
>   'citation("Biobase")' and for packages 'citation(pkgname)'.
9c9
< Welcome to beadarray version 2.2.0
---
> Welcome to beadarray version 2.0.2
11c11
< :startupmsg>  Utilities for start-up messages (version 0.7.2)
---
> :startupmsg>  Utilities for start-up messages (version 0.7.1)
17,18c17
< :SweaveListingUtils>  TeX listings package (version
< :SweaveListingUtils>  0.5.2)
---
> :SweaveListingUtils>  TeX listings package (version 0.5)
44c43
< :distr>  2.3.3)
---
> :distr>  2.3)
70,76d68
< Attaching package: 'evd'
< 
< The following object(s) are masked from 'package:lattice':
< 
<     qq
< 
< 
83c75
< :distrEx>  Extensions of package distr (version 2.3.1)
---
> :distrEx>  Extensions of package distr (version 2.3)
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< :RandVar>  Implementation of random variables (version 0.8.1)
---
> :RandVar>  Implementation of random variables (version 0.8)
111c103
< :distrMod>  (version 2.3.1)
---
> :distrMod>  (version 2.3)
144c136
< :RobAStBase>  Robust Asymptotic Statistics (version 0.8.1)
---
> :RobAStBase>  Robust Asymptotic Statistics (version 0.8)
166a159,165
> 
> Attaching package: 'lattice'
> 
> The following object(s) are masked from 'package:evd':
> 
>     qq
> 
219,220c218,219
<  [1] 0.1642185 0.1567648 0.1571410 0.1609188 0.1617499 0.1607157 0.1382646
<  [8] 0.1471997 0.1693088 0.1836652 0.1787724 0.1601283 0.1728984 0.1519412
---
>  [1] 0.1755693 0.1567648 0.1571410 0.1609188 0.1617499 0.1607157 0.1382646
>  [8] 0.1471997 0.1693088 0.1836652 0.1787724 0.1601283 0.1729001 0.1519412
279,284c278,283
< n x empMSE (loc)         1.2837045 1.826711 1.698428 1.3992302
< relMSE (loc)             0.9174362 1.305512 1.213830 1.0000000
< n x empMSE (scale)       0.6072430 1.573206 1.573206 0.7236061
< relMSE (scale)           0.8391900 2.174119 2.174119 1.0000000
< n x empMSE (loc + scale) 1.8909475 3.399917 3.271634 2.1228363
< relMSE (loc + scale)     0.8907646 1.601592 1.541162 1.0000000
---
> n x empMSE (loc)         1.2837045 1.826711 1.698428 1.399230
> relMSE (loc)             0.9174362 1.305512 1.213830 1.000000
> n x empMSE (scale)       0.6072430 1.573206 1.573206 0.723606
> relMSE (scale)           0.8391900 2.174119 2.174119 1.000000
> n x empMSE (loc + scale) 1.8909475 3.399917 3.271634 2.122836
> relMSE (loc + scale)     0.8907646 1.601592 1.541162 1.000000
290,295c289,294
< n x empMSE (loc)         1.172077 1.591148 1.2059413 1.1132052
< relMSE (loc)             1.052885 1.429339 1.0833055 1.0000000
< n x empMSE (scale)       1.084569 1.331247 0.8164451 0.5927791
< relMSE (scale)           1.829635 2.245773 1.3773176 1.0000000
< n x empMSE (loc + scale) 2.256646 2.922395 2.0223864 1.7059843
< relMSE (loc + scale)     1.322783 1.713026 1.1854660 1.0000000
---
> n x empMSE (loc)         1.172077 1.591148 1.205941 1.1132052
> relMSE (loc)             1.052885 1.429339 1.083305 1.0000000
> n x empMSE (scale)       1.084569 1.331247 0.816445 0.5927791
> relMSE (scale)           1.829635 2.245773 1.377318 1.0000000
> n x empMSE (loc + scale) 2.256646 2.922395 2.022386 1.7059843
> relMSE (loc + scale)     1.322783 1.713026 1.185466 1.0000000
326,327c325,326
< [1,] -0.028278572 0.9274339
< [2,] -0.001566506 1.0511230
---
> [1,] -0.028278572 0.927434
> [2,] -0.001566506 1.051123
337c336
<    6.22    0.36    6.96 
---
>   4.380   0.110   4.498 
 OK
* checking PDF version of manual ... OK