* using log directory 'd:/Rcompile/CRANpkg/local/2.13/SSOAP.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'SSOAP/DESCRIPTION' ... OK * this is package 'SSOAP' version '0.9-0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'SSOAP' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: SOAPClientInterface-class.Rd:38-40: Dropping empty section \examples prepare_Rd: SOAPData.Rd:57-58: Dropping empty section \examples prepare_Rd: SOAPFault.Rd:39-41: Dropping empty section \examples prepare_Rd: SOAPResult-class.Rd:42-44: Dropping empty section \examples prepare_Rd: SOAPResult.Rd:40-42: Dropping empty section \examples prepare_Rd: SOAPServer-class.Rd:73-75: Dropping empty section \examples prepare_Rd: SOAPServerDescription.Rd:56-58: Dropping empty section \examples prepare_Rd: SOAPType-class.Rd:45-47: Dropping empty section \examples prepare_Rd: WSDLMethod-class.Rd:57-59: Dropping empty section \examples prepare_Rd: WSDLParseHandlers.Rd:46-47: Dropping empty section \examples prepare_Rd: convertFromSOAP.Rd:36-38: Dropping empty section \examples prepare_Rd: getReturnNode.Rd:37-39: Dropping empty section \examples prepare_Rd: getSOAPType.Rd:38-40: Dropping empty section \examples prepare_Rd: isHTTPError.Rd:48-50: Dropping empty section \examples prepare_Rd: parseSOAP.Rd:45-47: Dropping empty section \examples prepare_Rd: server.Rd:50-51: Dropping empty section \examples prepare_Rd: toSOAP.Rd:68-69: Dropping empty section \examples prepare_Rd: writeSOAP.Rd:111-113: Dropping empty section \examples prepare_Rd: writeTypes.Rd:35-36: Dropping empty section \examples * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ERROR Running examples in 'SSOAP-Ex.R' failed The error most likely occurred in: > ### Name: genSOAPClientInterface > ### Title: Create R functions to access SOAP server methods > ### Aliases: genSOAPClientInterface > ### Keywords: interface programming > > ### ** Examples > > kegg = processWSDL("http://soap.genome.jp/KEGG.wsdl") > # note that we force the use of the 1.1 name spaces to get arrays > # handled correctly on the server side. > iface = genSOAPClientInterface(def = kegg, nameSpaces = "1.1") Note: Method with signature "PrimitiveSOAPType#list" chosen for function "resolve", target signature "PrimitiveSOAPType#SchemaCollection". "SOAPType#SchemaCollection" would also be valid Note: Method with signature "ArrayType#list" chosen for function "resolve", target signature "ArrayType#SchemaCollection". "SimpleSequenceType#SchemaCollection" would also be valid > > ## Not run: > ##D # This KEGG.wsdl is out of date > ##D tmp = processWSDL(system.file("examples", "KEGG.wsdl", package = "SSOAP")) > ##D iface = genSOAPClientInterface(tmp@operations[[1]], def = tmp, tmp@name, verbose=FALSE) > ## End(Not run) > > setAs("Definition", "character", + function(from) + structure(from@entry_id, names = from@definition)) > > setAs("ArrayOfPathwayElement", "character", + function(from) sapply(from, as, "character")) > > o = iface@functions$list_organisms() xmlns: URI SOAP/KEGG is not absolute xmlns: URI SOAP/KEGG is not absolute > > as(o, "character") [1] "" [2] "" [3] "" [4] "" [5] "" [6] "" [7] "" [8] "" [9] "" [10] "" [11] "" [12] "" [13] "" [14] "" [15] "" [16] "" [17] "" [18] "" [19] "" [20] "" [21] "" [22] "" [23] "" [24] "" [25] "" [26] "" [27] "" [28] "" [29] "" [30] "" [31] "" [32] "" [33] "" [34] "" [35] "" [36] "" [37] "" [38] "" [39] "" [40] "" [41] "" [42] "" [43] "" [44] "" [45] "" 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[1746] "" [1747] "" [1748] "" [1749] "" [1750] "" [1751] "" [1752] "" [1753] "" [1754] "" [1755] "" [1756] "" [1757] "" [1758] "" [1759] "" [1760] "" [1761] "" [1762] "" [1763] "" [1764] "" [1765] "" [1766] "" [1767] "" [1768] "" > > cat("See the file", system.file("examples", "KEGG.S", package = "SSOAP"), "for more examples\n") See the file d:/RCompile/CRANpkg/lib/2.13/SSOAP/examples/KEGG.S for more examples > > # Returns National Weather Service digital weather forecast data. > library(RCurl) Loading required package: bitops > if(url.exists("http://www.weather.gov/forecasts/xml/SOAP_server/ndfdXMLserver.php?wsdl")) { + w = processWSDL("http://www.weather.gov/forecasts/xml/SOAP_server/ndfdXMLserver.php?wsdl") + f = genSOAPClientInterface(,w) + + # For the next 5 days from now. + str = f@functions$NDFDgenByDay(38.9936, -77.0224, Sys.time() + 60*24*60, 5, "m", "12 hourly") + + library(XML) + xmlToList(xmlParse(str, asText = TRUE)) + } Error: could not find function "url.exists" Execution halted