* using log directory 'd:/Rcompile/CRANpkg/local/2.13/STAR.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * using options '--no-examples --no-tests --no-vignettes' * checking for file 'STAR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'STAR' version '0.3-4' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'STAR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE as.spikeTrain: no visible global function definition for 'spikeTimes' gamObj.gampsth: no visible binding for global variable 'PoissonF' gammaMLE: multiple local function definitions for 'rFct' with different formal arguments gssObj.gsspsth: no visible binding for global variable 'gfit' gssObj.gsspsth0: no visible binding for global variable 'gfit' invgaussMLE: multiple local function definitions for 'rFct' with different formal arguments lines.CountingProcessSamplePath: no visible binding for global variable 'st' mkAR: no visible binding for global variable 'lN.1' qqDuration: no visible binding for global variable 'yi' qqDuration: no visible binding for global variable 'si' thinProcess: no visible binding for global variable 'targetFct' thinProcess: no visible binding for global variable 'posMax' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... NOTE Note: significantly better compression could be obtained by using tools::resaveRdaFiles() or R CMD build --resave-data old_size new_size compress CAL1V.rda 26Kb 21Kb xz CAL2C.rda 25Kb 20Kb xz e060517ionon.rda 16Kb 14Kb xz e060817citron.rda 47Kb 37Kb xz e060817mix.rda 45Kb 35Kb xz e060817terpi.rda 48Kb 38Kb xz e070528citronellal.rda 44Kb 34Kb xz e070528spont.rda 15Kb 11Kb xz mPK.rda 161Kb 103Kb xz sPK.rda 30Kb 20Kb xz * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking sizes of PDF files under inst/doc ... NOTE 'qpdf' made some significant size reductions: compacted 'IEwSTARshort.pdf' from 3204Kb to 959Kb consider running tools::compactPDF() on these files * checking examples ... SKIPPED * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignettes ... SKIPPED * checking PDF version of manual ... OK * using check arguments '--no-examples --no-tests --no-vignettes'