* using log directory 'd:/Rcompile/CRANpkg/local/2.13/VGAM.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'VGAM/DESCRIPTION' ... OK * this is package 'VGAM' version '0.8-5' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'VGAM' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Coef.qrrvglm: no visible binding for global variable 'optimum' Coef.qrrvglm: no visible binding for global variable 'Darray' Coef.qrrvglm: no visible binding for global variable 'Tolerance' callcqoc: no visible binding for '<<-' assignment to '.VGAM.CQO.cmatrix' callcqoc: no visible binding for '<<-' assignment to '.VGAM.CQO.ocmatrix' calldcaoc: no visible binding for global variable 'U' cao.fit: no visible binding for global variable 'maxitl' cao.fit: no visible binding for global variable 'fv' cqo.fit: no visible binding for global variable 'modelno' cqo.fit: no visible binding for global variable 'quasi.newton' cqo.fit: no visible binding for global variable 'NOS' cqo.fit: no visible binding for global variable 'z' cqo.fit: no visible binding for global variable 'fv' loglinb3 : : no visible binding for global variable 'u3' loglinb3 : : no visible binding for global variable 'u2' loglinb3 : : no visible binding for global variable 'u23' loglinb3 : : no visible binding for global variable 'u1' loglinb3 : : no visible binding for global variable 'u13' loglinb3 : : no visible binding for global variable 'u12' loglinb3 : : no visible binding for global variable 'denom' rrvglm.fit: no visible binding for global variable 'modelno' rrvglm.fit: no visible binding for global variable 'fv' rrvglm.fit: no visible binding for global variable 'one.more' rrvglm.fit: no visible binding for global variable 'rrr.expression' update_default: no visible global function definition for 'getCall' uqo.fit: no visible binding for global variable 'CQO.FastAlgorithm' vgam.fit: no visible binding for global variable 'fv' vglm.fit: no visible binding for global variable 'fv' waldtest_formula: no visible global function definition for 'waldtest_lm' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking examples ... ** running examples for arch 'i386' ... ERROR Running examples in 'VGAM-Ex.R' failed The error most likely occurred in: > ### Name: DeLury > ### Title: DeLury's Method for Population Size Estimation > ### Aliases: DeLury > ### Keywords: models > > ### ** Examples > > pounds = c( 147, 2796, 6888, 7723, 5330, 8839, 6324, 3569, 8120, 8084, + 8252, 8411, 6757, 1152, 1500, 11945, 6995, 5851, 3221, 6345, + 3035, 6271, 5567, 3017, 4559, 4721, 3613, 473, 928, 2784, + 2375, 2640, 3569) > traps = c( 200, 3780, 7174, 8850, 5793, 9504, 6655, 3685, 8202, 8585, + 9105, 9069, 7920, 1215, 1471, 11597, 8470, 7770, 3430, 7970, + 4740, 8144, 7965, 5198, 7115, 8585, 6935, 1060, 2070, 5725, + 5235, 5480, 8300) > table1 = DeLury(pounds/1000, traps/1000) Error in function (classes, fdef, mtable) : unable to find an inherited method for function "coef", for signature "lm" Calls: DeLury -> coef -> Execution halted