* using log directory 'd:/Rcompile/CRANpkg/local/2.13/analogue.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'analogue/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'analogue' version '0.8-0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'analogue' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking sizes of PDF files under inst/doc ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** checking differences from 'analogue-Ex_i386.Rout' to 'analogue-Ex.Rout.save' ...
2c2
< This is vegan 2.0-2
---
> This is vegan 2.0-1
965c965
< V3.128   29.0 26.067 -2.93333   26.591   -2.40882 0.52035 2.4628 6.319
---
> V3.128   29.0 26.067 -2.93333   26.591   -2.40882 0.52035 2.4628 6.320
3476c3476
< V22.219     1
---
> V22.219     2
3887c3887
< V22.219     1
---
> V22.219     2
4766c4766
<  2.019e+00  9.173e-01  2.934e-15 -3.815e+00 
---
>  2.019e+00  9.173e-01  2.228e-14 -3.815e+00 
5390c5390
< V22.219     1
---
> V22.219     2
5620,5625c5620,5625
< Iteration   1: d.sq: 4283.4420
< Iteration   2: d.sq: 4312.3020
< Iteration   3: d.sq: 4340.7142
< Iteration   4: d.sq: 4355.3973
< Iteration   5: d.sq: 4366.5135
< Iteration   6: d.sq: 4369.9487
---
> Iteration   1: d.sq: 4283.4308
> Iteration   2: d.sq: 4312.2976
> Iteration   3: d.sq: 4340.6911
> Iteration   4: d.sq: 4355.3876
> Iteration   5: d.sq: 4366.4975
> Iteration   6: d.sq: 4369.9444
5848,5852c5848,5852
< Iteration   1: d.sq: 4853.8220
< Iteration   2: d.sq: 5013.5425
< Iteration   3: d.sq: 5110.0108
< Iteration   4: d.sq: 5135.7017
< Iteration   5: d.sq: 5137.9697
---
> Iteration   1: d.sq: 4853.7911
> Iteration   2: d.sq: 5013.4971
> Iteration   3: d.sq: 5109.9732
> Iteration   4: d.sq: 5135.6541
> Iteration   5: d.sq: 5137.9439
5863,5868c5863,5868
< Iteration   1: d.sq: 4283.4420
< Iteration   2: d.sq: 4312.3020
< Iteration   3: d.sq: 4340.7142
< Iteration   4: d.sq: 4355.3973
< Iteration   5: d.sq: 4366.5135
< Iteration   6: d.sq: 4369.9487
---
> Iteration   1: d.sq: 4283.4308
> Iteration   2: d.sq: 4312.2976
> Iteration   3: d.sq: 4340.6911
> Iteration   4: d.sq: 4355.3876
> Iteration   5: d.sq: 4366.4975
> Iteration   6: d.sq: 4369.9444
 OK
** running examples for arch 'x64' ... OK
** checking differences from 'analogue-Ex_x64.Rout' to 'analogue-Ex.Rout.save' ...
2c2
< This is vegan 2.0-2
---
> This is vegan 2.0-1
5620,5625c5620,5625
< Iteration   1: d.sq: 4283.4420
< Iteration   2: d.sq: 4312.3020
< Iteration   3: d.sq: 4340.7142
< Iteration   4: d.sq: 4355.3973
< Iteration   5: d.sq: 4366.5135
< Iteration   6: d.sq: 4369.9487
---
> Iteration   1: d.sq: 4283.4308
> Iteration   2: d.sq: 4312.2976
> Iteration   3: d.sq: 4340.6911
> Iteration   4: d.sq: 4355.3876
> Iteration   5: d.sq: 4366.4975
> Iteration   6: d.sq: 4369.9444
5848,5852c5848,5852
< Iteration   1: d.sq: 4853.8220
< Iteration   2: d.sq: 5013.5425
< Iteration   3: d.sq: 5110.0108
< Iteration   4: d.sq: 5135.7017
< Iteration   5: d.sq: 5137.9697
---
> Iteration   1: d.sq: 4853.7911
> Iteration   2: d.sq: 5013.4971
> Iteration   3: d.sq: 5109.9732
> Iteration   4: d.sq: 5135.6541
> Iteration   5: d.sq: 5137.9439
5863,5868c5863,5868
< Iteration   1: d.sq: 4283.4420
< Iteration   2: d.sq: 4312.3020
< Iteration   3: d.sq: 4340.7142
< Iteration   4: d.sq: 4355.3973
< Iteration   5: d.sq: 4366.5135
< Iteration   6: d.sq: 4369.9487
---
> Iteration   1: d.sq: 4283.4308
> Iteration   2: d.sq: 4312.2976
> Iteration   3: d.sq: 4340.6911
> Iteration   4: d.sq: 4355.3876
> Iteration   5: d.sq: 4366.4975
> Iteration   6: d.sq: 4369.9444
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... OK
* checking re-building of vignettes ... OK
* checking PDF version of manual ... OK