* using log directory 'd:/Rcompile/CRANpkg/local/2.13/bams.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'bams/DESCRIPTION' ... OK * this is package 'bams' version '1.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'bams' can be installed ... OK * checking installed package size ... NOTE installed size is 8.3Mb sub-directories of 1Mb or more: data 7.6Mb * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared object 'd:/RCompile/CRANpkg/lib/2.13/GLAD/libs/i386/GLAD.dll': LoadLibrary failure: Das angegebene Modul wurde nicht gefunden. exportData: no visible binding for global variable 'neuroblastoma' run.cghseg : : : no visible binding for global variable 'begin' run.smoothers: no visible binding for global variable 'annotation' runglad: no visible binding for global variable 'position' runglad: no visible binding for global variable 'logratio' runglad: no visible binding for global variable 'chromosome' runglad: no visible global function definition for 'as.profileCGH' runglad : : no visible binding for global variable 'daglad' runglad : : : no visible binding for global variable 'glad' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under inst/doc ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignettes ... OK * checking PDF version of manual ... OK