* using log directory 'd:/Rcompile/CRANpkg/local/2.13/cit.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'cit/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'cit' version '1.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'cit' can be installed ... ERROR Installation failed. The installation logfile: * installing *source* package 'cit' ... ** libs *** arch - i386 make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/local/2.13/cit/src-i386' g++ -I"d:/Rcompile/recent/R-2.13.2/include" -I"d:/Rcompile/CRANpkg/extralibs/local/include" -O2 -Wall -c cit_v5.cpp -o cit_v5.o gsl-config: not found g++ -shared -s -static-libgcc -o cit.dll tmp.def cit_v5.o -Ld:/Rcompile/CRANpkg/extralibs/local/lib -Ld:/Rcompile/recent/R-2.13.2/bin/i386 -lR gsl-config: not found cit_v5.o:cit_v5.cpp:(.text+0x8b1): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x8c1): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x8cf): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x9a0): undefined reference to `gsl_vector_set' cit_v5.o:cit_v5.cpp:(.text+0x9d0): undefined reference to `gsl_vector_set' cit_v5.o:cit_v5.cpp:(.text+0xa05): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0xa17): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xa2b): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0xa58): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0xa60): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0xa68): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0xa76): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0xa94): undefined reference to `gsl_stats_tss' cit_v5.o:cit_v5.cpp:(.text+0xad9): undefined reference to `gsl_cdf_fdist_Q' cit_v5.o:cit_v5.cpp:(.text+0xb20): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xb4c): undefined reference to `gsl_matrix_get' cit_v5.o:cit_v5.cpp:(.text+0xb66): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0xb81): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0xba1): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0xbb2): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0xbc4): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xbde): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0xc11): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0xc19): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0xc27): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0xc2f): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0xc3d): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0xc84): undefined reference to `gsl_cdf_fdist_Q' cit_v5.o:cit_v5.cpp:(.text+0xcc2): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xcec): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0xcfe): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0xd16): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0xd2b): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0xd45): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xd61): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0xd94): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0xd9c): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0xda4): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0xdb2): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0xdc0): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0xdd8): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xe08): undefined reference to `gsl_matrix_get' cit_v5.o:cit_v5.cpp:(.text+0xe22): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0xe3d): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0xe5d): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0xeae): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0xec6): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xeda): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0xf0d): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0xf15): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0xf23): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0xf2b): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0xf39): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0xf69): undefined reference to `gsl_cdf_fdist_Q' cit_v5.o:cit_v5.cpp:(.text+0xfa7): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xfd1): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0xfe3): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0xffb): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1010): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x102a): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1046): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1079): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x1081): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x1089): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1097): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x10a5): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x10d3): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x10eb): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1105): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1132): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x113a): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x1142): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x117e): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x1194): undefined reference to `gsl_matrix_get' cit_v5.o:cit_v5.cpp:(.text+0x11e5): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x127f): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x128d): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1324): undefined reference to `gsl_vector_set' cit_v5.o:cit_v5.cpp:(.text+0x1343): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1374): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1386): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x139e): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x13b3): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x13cd): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x13e9): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x141c): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x1424): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x142c): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x143a): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1448): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x1460): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1490): undefined reference to `gsl_matrix_get' cit_v5.o:cit_v5.cpp:(.text+0x14aa): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x14c5): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x14e5): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x14fc): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x150e): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1528): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x155b): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x1563): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x1571): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1579): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1587): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x1881): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x18ab): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1904): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1922): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1940): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1996): undefined reference to `gsl_vector_set' cit_v5.o:cit_v5.cpp:(.text+0x19b5): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x19e6): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x19f8): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x1a10): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1a25): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1a3f): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1a5b): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1a8e): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x1a96): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x1a9e): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1aac): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1aba): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x1ad2): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1b00): undefined reference to `gsl_matrix_get' cit_v5.o:cit_v5.cpp:(.text+0x1b1a): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1b35): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x1b55): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1b6c): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1b7e): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1b98): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1bcb): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x1bd3): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x1be1): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1be9): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1bf7): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x1d1a): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1d28): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x1d36): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x1d44): undefined reference to `gsl_vector_free' collect2: ld returned 1 exit status make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/local/2.13/cit/src-i386' ERROR: compilation failed for package 'cit' * removing 'd:/Rcompile/CRANpkg/lib/2.13/cit' * restoring previous 'd:/Rcompile/CRANpkg/lib/2.13/cit'