* using log directory 'd:/Rcompile/CRANpkg/local/2.13/drfit.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'drfit/DESCRIPTION' ... OK * this is package 'drfit' version '0.05-95' * package encoding: latin1 * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'drfit' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE checkexperiment: no visible binding for global variable 'type' checkexperiment: no visible binding for global variable 'conc' drfit: no visible binding for global variable 'ok' drfit: no visible binding for global variable 'dose' drplot: no visible binding for global variable 'dose' drplot: no visible binding for global variable 'Substance' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under inst/doc ... OK * checking examples ... OK * checking for unstated dependencies in tests ... OK * checking tests ... OK Running 'IM1xIPC81.R' Comparing 'IM1xIPC81.Rout' to 'IM1xIPC81.Rout.save' ...54,61c54,61 < 1 IM13 BF4 9 81 0.59176 3.0000 inactive NA NA NA microM < 2 IM14 BF4 20 216 -0.01030 3.1761 no fit NA NA NA microM < 3 IM15 BF4 9 135 0.59176 3.0000 inactive NA NA NA microM < 4 IM16 BF4 9 108 0.59176 3.0000 inactive NA NA NA microM < 5 IM17 BF4 9 81 0.59176 3.0000 linlogit 2.5786 2.50572 2.66174 microM < 6 IM18 BF4 9 135 0.59176 3.0000 linlogit 1.6806 1.62297 1.74189 microM < 7 IM19 BF4 9 81 0.59176 3.0000 linlogit 1.6496 1.59848 1.70315 microM < 8 IM1-10 BF4 11 162 -0.01030 3.0000 linlogit 0.7697 0.68701 0.85442 microM --- > 1 IM13 BF4 9 81 0.591760 3.0000 inactive NA NA NA microM > 2 IM14 BF4 20 216 -0.010300 3.1761 no fit NA NA NA microM > 3 IM15 BF4 9 135 0.591760 3.0000 inactive NA NA NA microM > 4 IM16 BF4 9 108 0.591760 3.0000 inactive NA NA NA microM > 5 IM17 BF4 9 81 0.591760 3.0000 linlogit 2.5786 2.50572 2.66174 microM > 6 IM18 BF4 9 135 0.591760 3.0000 linlogit 1.6806 1.62297 1.74189 microM > 7 IM19 BF4 9 81 0.591760 3.0000 linlogit 1.6496 1.59848 1.70315 microM > 8 IM1-10 BF4 11 162 -0.010300 3.0000 linlogit 0.7697 0.68701 0.85442 microM Running 'IM1xVibrio.R' Comparing 'IM1xVibrio.Rout' to 'IM1xVibrio.Rout.save' ...40,47c40,47 < 1 IM13 BF4 13 22 -5.30103 4.699 probit 3.93991 3.86362 4.01601 microM < 2 IM14 BF4 12 57 -4.30103 4.699 probit 3.54421 3.50302 3.58555 microM < 3 IM15 BF4 7 20 -0.30103 4.699 probit 3.13985 3.11359 3.16624 microM < 4 IM16 BF4 13 30 -4.30103 4.699 probit 3.18042 3.14358 3.21762 microM < 5 IM17 BF4 10 20 -1.30103 4.699 probit 2.43173 2.36807 2.49512 microM < 6 IM18 BF4 10 17 -2.30103 2.699 probit 1.40152 1.31467 1.48806 microM < 7 IM19 BF4 13 22 -5.30103 2.699 probit 0.71579 0.67038 0.75925 microM < 8 IM1-10 BF4 11 20 -6.30103 2.699 probit -0.17903 -0.25694 -0.10372 microM --- > 1 IM13 BF4 13 22 -5.30103 4.6990 probit 3.93991 3.86362 4.01601 microM > 2 IM14 BF4 12 57 -4.30103 4.6990 probit 3.54421 3.50302 3.58555 microM > 3 IM15 BF4 7 20 -0.30103 4.6990 probit 3.13985 3.11359 3.16624 microM > 4 IM16 BF4 13 30 -4.30103 4.6990 probit 3.18042 3.14358 3.21762 microM > 5 IM17 BF4 10 20 -1.30103 4.6990 probit 2.43173 2.36807 2.49512 microM > 6 IM18 BF4 10 17 -2.30103 2.6990 probit 1.40152 1.31467 1.48806 microM > 7 IM19 BF4 13 22 -5.30103 2.6990 probit 0.71579 0.67038 0.75925 microM > 8 IM1-10 BF4 11 20 -6.30103 2.6990 probit -0.17903 -0.25694 -0.10372 microM Running 'XY.R' Comparing 'XY.Rout' to 'XY.Rout.save' ... OK Running 'antifoul.R' Comparing 'antifoul.Rout' to 'antifoul.Rout.save' ... OK Running 'pyrithione.R' Comparing 'pyrithione.Rout' to 'pyrithione.Rout.save' ...72c72 < 1 -0.346 2.119 -0.266997 --- > 1 -0.346 2.119 -0.266998 79c79 < 8 -0.413 1.742 0.610810 --- > 8 -0.413 1.742 0.610900 83c83 < 12 -0.158 1.041 -0.024161 --- > 12 -0.158 1.041 -0.024165 * checking PDF version of manual ... OK